Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1162 and EX28DRAFT_1163 are separated by 117 nucleotides EX28DRAFT_1163 and EX28DRAFT_1164 are separated by 3 nucleotides
EX28DRAFT_1162: EX28DRAFT_1162 - Major Facilitator Superfamily, at 1,182,628 to 1,184,043
_1162
EX28DRAFT_1163: EX28DRAFT_1163 - Transcriptional regulator, at 1,184,161 to 1,185,066
_1163
EX28DRAFT_1164: EX28DRAFT_1164 - heavy metal sensor kinase, at 1,185,070 to 1,186,524
_1164
Position (kb)
1184
1185
1186 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1183.284 kb on + strand, within EX28DRAFT_1162 at 1183.377 kb on + strand, within EX28DRAFT_1162 at 1183.544 kb on - strand, within EX28DRAFT_1162 at 1183.698 kb on + strand, within EX28DRAFT_1162 at 1183.759 kb on - strand, within EX28DRAFT_1162 at 1184.035 kb on + strand at 1184.059 kb on + strand at 1184.065 kb on + strand at 1184.066 kb on - strand at 1184.066 kb on - strand at 1184.080 kb on + strand at 1184.082 kb on + strand at 1184.083 kb on - strand at 1184.138 kb on - strand at 1184.145 kb on + strand at 1184.146 kb on - strand at 1184.179 kb on - strand at 1184.307 kb on + strand, within EX28DRAFT_1163 at 1184.332 kb on - strand, within EX28DRAFT_1163 at 1184.502 kb on + strand, within EX28DRAFT_1163 at 1184.503 kb on - strand, within EX28DRAFT_1163 at 1184.534 kb on + strand, within EX28DRAFT_1163 at 1184.535 kb on - strand, within EX28DRAFT_1163 at 1184.535 kb on - strand, within EX28DRAFT_1163 at 1184.535 kb on - strand, within EX28DRAFT_1163 at 1184.728 kb on + strand, within EX28DRAFT_1163 at 1184.933 kb on + strand, within EX28DRAFT_1163 at 1185.351 kb on + strand, within EX28DRAFT_1164 at 1185.353 kb on + strand, within EX28DRAFT_1164 at 1185.415 kb on + strand, within EX28DRAFT_1164 at 1185.416 kb on - strand, within EX28DRAFT_1164 at 1185.509 kb on - strand, within EX28DRAFT_1164 at 1185.544 kb on - strand, within EX28DRAFT_1164 at 1185.617 kb on + strand, within EX28DRAFT_1164 at 1185.617 kb on + strand, within EX28DRAFT_1164 at 1185.618 kb on - strand, within EX28DRAFT_1164 at 1185.771 kb on + strand, within EX28DRAFT_1164 at 1185.771 kb on + strand, within EX28DRAFT_1164 at 1185.861 kb on + strand, within EX28DRAFT_1164 at 1185.987 kb on - strand, within EX28DRAFT_1164 at 1186.029 kb on - strand, within EX28DRAFT_1164
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 1,183,284 + EX28DRAFT_1162 0.46 +0.3 1,183,377 + EX28DRAFT_1162 0.53 -0.1 1,183,544 - EX28DRAFT_1162 0.65 -1.6 1,183,698 + EX28DRAFT_1162 0.76 -0.2 1,183,759 - EX28DRAFT_1162 0.80 +0.7 1,184,035 + -0.4 1,184,059 + +0.2 1,184,065 + -0.5 1,184,066 - -0.5 1,184,066 - -0.2 1,184,080 + -1.0 1,184,082 + -2.1 1,184,083 - -0.8 1,184,138 - -0.0 1,184,145 + +0.2 1,184,146 - +0.4 1,184,179 - +0.7 1,184,307 + EX28DRAFT_1163 0.16 -1.6 1,184,332 - EX28DRAFT_1163 0.19 -1.5 1,184,502 + EX28DRAFT_1163 0.38 -1.9 1,184,503 - EX28DRAFT_1163 0.38 -2.5 1,184,534 + EX28DRAFT_1163 0.41 +0.2 1,184,535 - EX28DRAFT_1163 0.41 -0.2 1,184,535 - EX28DRAFT_1163 0.41 -0.8 1,184,535 - EX28DRAFT_1163 0.41 -1.9 1,184,728 + EX28DRAFT_1163 0.63 -0.6 1,184,933 + EX28DRAFT_1163 0.85 -0.6 1,185,351 + EX28DRAFT_1164 0.19 -0.7 1,185,353 + EX28DRAFT_1164 0.19 +0.9 1,185,415 + EX28DRAFT_1164 0.24 +0.1 1,185,416 - EX28DRAFT_1164 0.24 -0.8 1,185,509 - EX28DRAFT_1164 0.30 -0.6 1,185,544 - EX28DRAFT_1164 0.33 -0.9 1,185,617 + EX28DRAFT_1164 0.38 +0.4 1,185,617 + EX28DRAFT_1164 0.38 -0.1 1,185,618 - EX28DRAFT_1164 0.38 -3.5 1,185,771 + EX28DRAFT_1164 0.48 +1.5 1,185,771 + EX28DRAFT_1164 0.48 +0.4 1,185,861 + EX28DRAFT_1164 0.54 -0.3 1,185,987 - EX28DRAFT_1164 0.63 -0.1 1,186,029 - EX28DRAFT_1164 0.66 -0.1
Or see this region's nucleotide sequence