Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1163

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1162 and EX28DRAFT_1163 are separated by 117 nucleotidesEX28DRAFT_1163 and EX28DRAFT_1164 are separated by 3 nucleotides EX28DRAFT_1162: EX28DRAFT_1162 - Major Facilitator Superfamily, at 1,182,628 to 1,184,043 _1162 EX28DRAFT_1163: EX28DRAFT_1163 - Transcriptional regulator, at 1,184,161 to 1,185,066 _1163 EX28DRAFT_1164: EX28DRAFT_1164 - heavy metal sensor kinase, at 1,185,070 to 1,186,524 _1164 Position (kb) 1184 1185 1186Strain fitness (log2 ratio) -3 -2 -1 0 1at 1183.284 kb on + strand, within EX28DRAFT_1162at 1183.377 kb on + strand, within EX28DRAFT_1162at 1183.544 kb on - strand, within EX28DRAFT_1162at 1183.698 kb on + strand, within EX28DRAFT_1162at 1183.759 kb on - strand, within EX28DRAFT_1162at 1184.035 kb on + strandat 1184.059 kb on + strandat 1184.065 kb on + strandat 1184.066 kb on - strandat 1184.066 kb on - strandat 1184.080 kb on + strandat 1184.082 kb on + strandat 1184.083 kb on - strandat 1184.138 kb on - strandat 1184.145 kb on + strandat 1184.146 kb on - strandat 1184.179 kb on - strandat 1184.307 kb on + strand, within EX28DRAFT_1163at 1184.332 kb on - strand, within EX28DRAFT_1163at 1184.502 kb on + strand, within EX28DRAFT_1163at 1184.503 kb on - strand, within EX28DRAFT_1163at 1184.534 kb on + strand, within EX28DRAFT_1163at 1184.535 kb on - strand, within EX28DRAFT_1163at 1184.535 kb on - strand, within EX28DRAFT_1163at 1184.535 kb on - strand, within EX28DRAFT_1163at 1184.728 kb on + strand, within EX28DRAFT_1163at 1184.933 kb on + strand, within EX28DRAFT_1163at 1185.351 kb on + strand, within EX28DRAFT_1164at 1185.353 kb on + strand, within EX28DRAFT_1164at 1185.415 kb on + strand, within EX28DRAFT_1164at 1185.416 kb on - strand, within EX28DRAFT_1164at 1185.509 kb on - strand, within EX28DRAFT_1164at 1185.544 kb on - strand, within EX28DRAFT_1164at 1185.617 kb on + strand, within EX28DRAFT_1164at 1185.617 kb on + strand, within EX28DRAFT_1164at 1185.618 kb on - strand, within EX28DRAFT_1164at 1185.771 kb on + strand, within EX28DRAFT_1164at 1185.771 kb on + strand, within EX28DRAFT_1164at 1185.861 kb on + strand, within EX28DRAFT_1164at 1185.987 kb on - strand, within EX28DRAFT_1164at 1186.029 kb on - strand, within EX28DRAFT_1164

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,183,284 + EX28DRAFT_1162 0.46 +0.3
1,183,377 + EX28DRAFT_1162 0.53 -0.1
1,183,544 - EX28DRAFT_1162 0.65 -1.6
1,183,698 + EX28DRAFT_1162 0.76 -0.2
1,183,759 - EX28DRAFT_1162 0.80 +0.7
1,184,035 + -0.4
1,184,059 + +0.2
1,184,065 + -0.5
1,184,066 - -0.5
1,184,066 - -0.2
1,184,080 + -1.0
1,184,082 + -2.1
1,184,083 - -0.8
1,184,138 - -0.0
1,184,145 + +0.2
1,184,146 - +0.4
1,184,179 - +0.7
1,184,307 + EX28DRAFT_1163 0.16 -1.6
1,184,332 - EX28DRAFT_1163 0.19 -1.5
1,184,502 + EX28DRAFT_1163 0.38 -1.9
1,184,503 - EX28DRAFT_1163 0.38 -2.5
1,184,534 + EX28DRAFT_1163 0.41 +0.2
1,184,535 - EX28DRAFT_1163 0.41 -0.2
1,184,535 - EX28DRAFT_1163 0.41 -0.8
1,184,535 - EX28DRAFT_1163 0.41 -1.9
1,184,728 + EX28DRAFT_1163 0.63 -0.6
1,184,933 + EX28DRAFT_1163 0.85 -0.6
1,185,351 + EX28DRAFT_1164 0.19 -0.7
1,185,353 + EX28DRAFT_1164 0.19 +0.9
1,185,415 + EX28DRAFT_1164 0.24 +0.1
1,185,416 - EX28DRAFT_1164 0.24 -0.8
1,185,509 - EX28DRAFT_1164 0.30 -0.6
1,185,544 - EX28DRAFT_1164 0.33 -0.9
1,185,617 + EX28DRAFT_1164 0.38 +0.4
1,185,617 + EX28DRAFT_1164 0.38 -0.1
1,185,618 - EX28DRAFT_1164 0.38 -3.5
1,185,771 + EX28DRAFT_1164 0.48 +1.5
1,185,771 + EX28DRAFT_1164 0.48 +0.4
1,185,861 + EX28DRAFT_1164 0.54 -0.3
1,185,987 - EX28DRAFT_1164 0.63 -0.1
1,186,029 - EX28DRAFT_1164 0.66 -0.1

Or see this region's nucleotide sequence