Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1130

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1127 and EX28DRAFT_1128 are separated by 165 nucleotidesEX28DRAFT_1128 and EX28DRAFT_1129 are separated by 155 nucleotidesEX28DRAFT_1129 and EX28DRAFT_1130 are separated by 5 nucleotidesEX28DRAFT_1130 and EX28DRAFT_1131 are separated by 87 nucleotidesEX28DRAFT_1131 and EX28DRAFT_1132 are separated by 47 nucleotides EX28DRAFT_1127: EX28DRAFT_1127 - hypothetical protein, at 1,143,015 to 1,143,806 _1127 EX28DRAFT_1128: EX28DRAFT_1128 - hypothetical protein, at 1,143,972 to 1,144,211 _1128 EX28DRAFT_1129: EX28DRAFT_1129 - hypothetical protein, at 1,144,367 to 1,144,786 _1129 EX28DRAFT_1130: EX28DRAFT_1130 - RNA polymerase sigma factor, sigma-70 family, at 1,144,792 to 1,145,352 _1130 EX28DRAFT_1131: EX28DRAFT_1131 - hypothetical protein, at 1,145,440 to 1,145,811 _1131 EX28DRAFT_1132: EX28DRAFT_1132 - Thiol:disulfide interchange protein, at 1,145,859 to 1,147,883 _1132 Position (kb) 1144 1145 1146Strain fitness (log2 ratio) -3 -2 -1 0 1at 1143.932 kb on + strandat 1144.054 kb on + strand, within EX28DRAFT_1128at 1144.112 kb on - strand, within EX28DRAFT_1128at 1144.299 kb on + strandat 1144.299 kb on + strandat 1144.299 kb on + strandat 1144.320 kb on + strandat 1144.351 kb on - strandat 1144.360 kb on - strandat 1144.437 kb on + strand, within EX28DRAFT_1129at 1144.673 kb on - strand, within EX28DRAFT_1129at 1144.925 kb on - strand, within EX28DRAFT_1130at 1145.055 kb on - strand, within EX28DRAFT_1130at 1145.129 kb on - strand, within EX28DRAFT_1130at 1145.232 kb on + strand, within EX28DRAFT_1130at 1145.348 kb on + strandat 1145.721 kb on + strand, within EX28DRAFT_1131at 1145.721 kb on + strand, within EX28DRAFT_1131at 1145.780 kb on + strandat 1145.780 kb on + strandat 1145.781 kb on - strandat 1146.025 kb on + strandat 1146.026 kb on - strandat 1146.045 kb on + strandat 1146.045 kb on + strandat 1146.144 kb on - strand, within EX28DRAFT_1132at 1146.333 kb on - strand, within EX28DRAFT_1132

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,143,932 + +0.7
1,144,054 + EX28DRAFT_1128 0.34 +0.7
1,144,112 - EX28DRAFT_1128 0.58 -3.3
1,144,299 + +0.9
1,144,299 + +0.1
1,144,299 + +1.4
1,144,320 + -0.3
1,144,351 - +0.6
1,144,360 - -1.0
1,144,437 + EX28DRAFT_1129 0.17 +0.3
1,144,673 - EX28DRAFT_1129 0.73 -2.1
1,144,925 - EX28DRAFT_1130 0.24 -1.0
1,145,055 - EX28DRAFT_1130 0.47 -2.1
1,145,129 - EX28DRAFT_1130 0.60 -1.5
1,145,232 + EX28DRAFT_1130 0.78 -1.1
1,145,348 + +0.7
1,145,721 + EX28DRAFT_1131 0.76 -0.5
1,145,721 + EX28DRAFT_1131 0.76 -0.5
1,145,780 + -2.8
1,145,780 + +0.5
1,145,781 - +0.1
1,146,025 + +0.1
1,146,026 - +0.3
1,146,045 + -1.4
1,146,045 + +1.0
1,146,144 - EX28DRAFT_1132 0.14 +1.5
1,146,333 - EX28DRAFT_1132 0.23 +0.5

Or see this region's nucleotide sequence