Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0981

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0980 and EX28DRAFT_0981 are separated by 14 nucleotidesEX28DRAFT_0981 and EX28DRAFT_0982 are separated by 22 nucleotidesEX28DRAFT_0982 and EX28DRAFT_0983 overlap by 14 nucleotides EX28DRAFT_0980: EX28DRAFT_0980 - Glycosidases, at 980,345 to 982,042 _0980 EX28DRAFT_0981: EX28DRAFT_0981 - ABC-type sugar transport system, periplasmic component, at 982,057 to 983,349 _0981 EX28DRAFT_0982: EX28DRAFT_0982 - ABC-type sugar transport systems, permease components, at 983,372 to 984,253 _0982 EX28DRAFT_0983: EX28DRAFT_0983 - ABC-type sugar transport system, permease component, at 984,240 to 985,082 _0983 Position (kb) 982 983 984Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 981.201 kb on - strand, within EX28DRAFT_0980at 981.201 kb on - strand, within EX28DRAFT_0980at 981.236 kb on + strand, within EX28DRAFT_0980at 981.528 kb on + strand, within EX28DRAFT_0980at 981.594 kb on + strand, within EX28DRAFT_0980at 981.678 kb on - strand, within EX28DRAFT_0980at 982.155 kb on + strandat 982.270 kb on + strand, within EX28DRAFT_0981at 982.270 kb on + strand, within EX28DRAFT_0981at 982.270 kb on + strand, within EX28DRAFT_0981at 982.270 kb on + strand, within EX28DRAFT_0981at 982.271 kb on - strand, within EX28DRAFT_0981at 982.271 kb on - strand, within EX28DRAFT_0981at 982.288 kb on - strand, within EX28DRAFT_0981at 982.329 kb on + strand, within EX28DRAFT_0981at 982.339 kb on + strand, within EX28DRAFT_0981at 982.340 kb on - strand, within EX28DRAFT_0981at 982.407 kb on - strand, within EX28DRAFT_0981at 982.423 kb on + strand, within EX28DRAFT_0981at 982.423 kb on + strand, within EX28DRAFT_0981at 982.423 kb on + strand, within EX28DRAFT_0981at 982.424 kb on - strand, within EX28DRAFT_0981at 982.424 kb on - strand, within EX28DRAFT_0981at 982.510 kb on + strand, within EX28DRAFT_0981at 982.759 kb on - strand, within EX28DRAFT_0981at 982.858 kb on + strand, within EX28DRAFT_0981at 982.858 kb on + strand, within EX28DRAFT_0981at 982.859 kb on - strand, within EX28DRAFT_0981at 983.130 kb on + strand, within EX28DRAFT_0981at 983.496 kb on + strand, within EX28DRAFT_0982at 983.545 kb on + strand, within EX28DRAFT_0982at 983.549 kb on + strand, within EX28DRAFT_0982at 983.549 kb on + strand, within EX28DRAFT_0982at 983.549 kb on + strand, within EX28DRAFT_0982at 983.550 kb on - strand, within EX28DRAFT_0982at 983.550 kb on - strand, within EX28DRAFT_0982at 983.717 kb on + strand, within EX28DRAFT_0982at 983.717 kb on + strand, within EX28DRAFT_0982at 983.756 kb on + strand, within EX28DRAFT_0982at 983.756 kb on + strand, within EX28DRAFT_0982at 983.756 kb on + strand, within EX28DRAFT_0982at 983.756 kb on + strand, within EX28DRAFT_0982at 983.757 kb on - strand, within EX28DRAFT_0982at 983.790 kb on - strand, within EX28DRAFT_0982at 983.941 kb on + strand, within EX28DRAFT_0982at 984.068 kb on + strand, within EX28DRAFT_0982at 984.109 kb on + strand, within EX28DRAFT_0982at 984.109 kb on + strand, within EX28DRAFT_0982at 984.259 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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981,201 - EX28DRAFT_0980 0.50 +0.4
981,201 - EX28DRAFT_0980 0.50 -1.6
981,236 + EX28DRAFT_0980 0.52 +0.9
981,528 + EX28DRAFT_0980 0.70 +0.2
981,594 + EX28DRAFT_0980 0.74 -1.6
981,678 - EX28DRAFT_0980 0.79 -1.1
982,155 + +0.3
982,270 + EX28DRAFT_0981 0.16 +1.2
982,270 + EX28DRAFT_0981 0.16 +0.5
982,270 + EX28DRAFT_0981 0.16 +0.2
982,270 + EX28DRAFT_0981 0.16 +1.0
982,271 - EX28DRAFT_0981 0.17 +2.2
982,271 - EX28DRAFT_0981 0.17 -0.1
982,288 - EX28DRAFT_0981 0.18 +0.5
982,329 + EX28DRAFT_0981 0.21 -1.3
982,339 + EX28DRAFT_0981 0.22 +0.6
982,340 - EX28DRAFT_0981 0.22 -3.4
982,407 - EX28DRAFT_0981 0.27 +0.2
982,423 + EX28DRAFT_0981 0.28 +0.6
982,423 + EX28DRAFT_0981 0.28 -0.1
982,423 + EX28DRAFT_0981 0.28 -0.8
982,424 - EX28DRAFT_0981 0.28 +0.0
982,424 - EX28DRAFT_0981 0.28 -3.0
982,510 + EX28DRAFT_0981 0.35 -0.6
982,759 - EX28DRAFT_0981 0.54 +0.0
982,858 + EX28DRAFT_0981 0.62 -0.5
982,858 + EX28DRAFT_0981 0.62 +1.1
982,859 - EX28DRAFT_0981 0.62 -0.2
983,130 + EX28DRAFT_0981 0.83 -0.3
983,496 + EX28DRAFT_0982 0.14 -2.0
983,545 + EX28DRAFT_0982 0.20 -0.2
983,549 + EX28DRAFT_0982 0.20 -0.0
983,549 + EX28DRAFT_0982 0.20 -0.4
983,549 + EX28DRAFT_0982 0.20 +0.3
983,550 - EX28DRAFT_0982 0.20 +0.7
983,550 - EX28DRAFT_0982 0.20 +0.0
983,717 + EX28DRAFT_0982 0.39 +0.0
983,717 + EX28DRAFT_0982 0.39 -0.2
983,756 + EX28DRAFT_0982 0.44 -0.8
983,756 + EX28DRAFT_0982 0.44 +0.7
983,756 + EX28DRAFT_0982 0.44 -2.5
983,756 + EX28DRAFT_0982 0.44 -2.0
983,757 - EX28DRAFT_0982 0.44 -0.2
983,790 - EX28DRAFT_0982 0.47 -1.0
983,941 + EX28DRAFT_0982 0.65 -2.7
984,068 + EX28DRAFT_0982 0.79 -0.3
984,109 + EX28DRAFT_0982 0.84 +0.0
984,109 + EX28DRAFT_0982 0.84 +0.1
984,259 + +1.0

Or see this region's nucleotide sequence