Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0871

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0869 and EX28DRAFT_0870 are separated by 14 nucleotidesEX28DRAFT_0870 and EX28DRAFT_0871 are separated by 11 nucleotidesEX28DRAFT_0871 and EX28DRAFT_0872 overlap by 4 nucleotides EX28DRAFT_0869: EX28DRAFT_0869 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 882,514 to 883,434 _0869 EX28DRAFT_0870: EX28DRAFT_0870 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 883,449 to 884,357 _0870 EX28DRAFT_0871: EX28DRAFT_0871 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 884,369 to 885,382 _0871 EX28DRAFT_0872: EX28DRAFT_0872 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 885,379 to 886,383 _0872 Position (kb) 884 885 886Strain fitness (log2 ratio) -2 -1 0 1at 883.507 kb on + strandat 883.635 kb on - strand, within EX28DRAFT_0870at 883.695 kb on + strand, within EX28DRAFT_0870at 883.754 kb on + strand, within EX28DRAFT_0870at 883.992 kb on - strand, within EX28DRAFT_0870at 884.034 kb on - strand, within EX28DRAFT_0870at 884.059 kb on + strand, within EX28DRAFT_0870at 884.122 kb on - strand, within EX28DRAFT_0870at 884.122 kb on - strand, within EX28DRAFT_0870at 884.456 kb on - strandat 884.476 kb on + strand, within EX28DRAFT_0871at 884.477 kb on - strand, within EX28DRAFT_0871at 884.727 kb on - strand, within EX28DRAFT_0871at 884.728 kb on + strand, within EX28DRAFT_0871at 884.851 kb on + strand, within EX28DRAFT_0871at 884.852 kb on - strand, within EX28DRAFT_0871at 884.852 kb on - strand, within EX28DRAFT_0871at 884.884 kb on + strand, within EX28DRAFT_0871at 884.953 kb on + strand, within EX28DRAFT_0871at 885.095 kb on + strand, within EX28DRAFT_0871at 885.140 kb on + strand, within EX28DRAFT_0871at 885.140 kb on + strand, within EX28DRAFT_0871at 885.141 kb on - strand, within EX28DRAFT_0871at 885.390 kb on - strandat 885.730 kb on - strand, within EX28DRAFT_0872at 885.730 kb on - strand, within EX28DRAFT_0872at 885.769 kb on + strand, within EX28DRAFT_0872at 885.895 kb on - strand, within EX28DRAFT_0872at 885.895 kb on - strand, within EX28DRAFT_0872at 885.901 kb on - strand, within EX28DRAFT_0872at 886.093 kb on + strand, within EX28DRAFT_0872at 886.094 kb on - strand, within EX28DRAFT_0872at 886.094 kb on - strand, within EX28DRAFT_0872at 886.094 kb on - strand, within EX28DRAFT_0872at 886.094 kb on - strand, within EX28DRAFT_0872at 886.123 kb on + strand, within EX28DRAFT_0872at 886.123 kb on + strand, within EX28DRAFT_0872at 886.136 kb on - strand, within EX28DRAFT_0872at 886.140 kb on + strand, within EX28DRAFT_0872at 886.140 kb on + strand, within EX28DRAFT_0872at 886.140 kb on + strand, within EX28DRAFT_0872at 886.213 kb on - strand, within EX28DRAFT_0872at 886.314 kb on + strandat 886.380 kb on - strandat 886.380 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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883,507 + +0.0
883,635 - EX28DRAFT_0870 0.20 +0.2
883,695 + EX28DRAFT_0870 0.27 +1.3
883,754 + EX28DRAFT_0870 0.34 -0.6
883,992 - EX28DRAFT_0870 0.60 -0.4
884,034 - EX28DRAFT_0870 0.64 +0.9
884,059 + EX28DRAFT_0870 0.67 -0.7
884,122 - EX28DRAFT_0870 0.74 +0.2
884,122 - EX28DRAFT_0870 0.74 +0.3
884,456 - -1.0
884,476 + EX28DRAFT_0871 0.11 +0.6
884,477 - EX28DRAFT_0871 0.11 +0.8
884,727 - EX28DRAFT_0871 0.35 -0.2
884,728 + EX28DRAFT_0871 0.35 +1.5
884,851 + EX28DRAFT_0871 0.48 -0.6
884,852 - EX28DRAFT_0871 0.48 +0.5
884,852 - EX28DRAFT_0871 0.48 +0.3
884,884 + EX28DRAFT_0871 0.51 -0.0
884,953 + EX28DRAFT_0871 0.58 +0.4
885,095 + EX28DRAFT_0871 0.72 +0.5
885,140 + EX28DRAFT_0871 0.76 -0.1
885,140 + EX28DRAFT_0871 0.76 +0.4
885,141 - EX28DRAFT_0871 0.76 -0.5
885,390 - -0.6
885,730 - EX28DRAFT_0872 0.35 -0.5
885,730 - EX28DRAFT_0872 0.35 -0.4
885,769 + EX28DRAFT_0872 0.39 +0.1
885,895 - EX28DRAFT_0872 0.51 +0.6
885,895 - EX28DRAFT_0872 0.51 -0.9
885,901 - EX28DRAFT_0872 0.52 -0.9
886,093 + EX28DRAFT_0872 0.71 -0.1
886,094 - EX28DRAFT_0872 0.71 -0.1
886,094 - EX28DRAFT_0872 0.71 -1.5
886,094 - EX28DRAFT_0872 0.71 -2.4
886,094 - EX28DRAFT_0872 0.71 -2.0
886,123 + EX28DRAFT_0872 0.74 -0.2
886,123 + EX28DRAFT_0872 0.74 +0.3
886,136 - EX28DRAFT_0872 0.75 +0.4
886,140 + EX28DRAFT_0872 0.76 -0.1
886,140 + EX28DRAFT_0872 0.76 -0.5
886,140 + EX28DRAFT_0872 0.76 -1.1
886,213 - EX28DRAFT_0872 0.83 +0.3
886,314 + +0.0
886,380 - +0.4
886,380 - +1.4

Or see this region's nucleotide sequence