Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0643

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0642 and EX28DRAFT_0643 are separated by 99 nucleotidesEX28DRAFT_0643 and EX28DRAFT_0644 are separated by 425 nucleotides EX28DRAFT_0642: EX28DRAFT_0642 - Branched-chain amino acid ABC-type transport system, permease components, at 635,894 to 636,808 _0642 EX28DRAFT_0643: EX28DRAFT_0643 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 636,908 to 638,029 _0643 EX28DRAFT_0644: EX28DRAFT_0644 - yecA family protein, at 638,455 to 639,123 _0644 Position (kb) 636 637 638 639Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 636.247 kb on + strand, within EX28DRAFT_0642at 636.247 kb on + strand, within EX28DRAFT_0642at 636.248 kb on - strand, within EX28DRAFT_0642at 636.358 kb on - strand, within EX28DRAFT_0642at 636.358 kb on - strand, within EX28DRAFT_0642at 636.532 kb on - strand, within EX28DRAFT_0642at 636.663 kb on + strand, within EX28DRAFT_0642at 636.677 kb on - strand, within EX28DRAFT_0642at 636.678 kb on + strand, within EX28DRAFT_0642at 636.678 kb on + strand, within EX28DRAFT_0642at 636.678 kb on + strand, within EX28DRAFT_0642at 636.679 kb on - strand, within EX28DRAFT_0642at 636.679 kb on - strand, within EX28DRAFT_0642at 636.679 kb on - strand, within EX28DRAFT_0642at 636.679 kb on - strand, within EX28DRAFT_0642at 636.771 kb on - strandat 636.779 kb on - strandat 636.779 kb on - strandat 636.802 kb on + strandat 636.802 kb on + strandat 636.802 kb on + strandat 636.803 kb on - strandat 636.858 kb on - strandat 636.858 kb on - strandat 636.858 kb on - strandat 636.922 kb on + strandat 636.924 kb on + strandat 636.948 kb on + strandat 636.948 kb on + strandat 636.958 kb on - strandat 636.958 kb on - strandat 637.107 kb on + strand, within EX28DRAFT_0643at 637.107 kb on + strand, within EX28DRAFT_0643at 637.108 kb on - strand, within EX28DRAFT_0643at 637.108 kb on - strand, within EX28DRAFT_0643at 637.122 kb on + strand, within EX28DRAFT_0643at 637.171 kb on + strand, within EX28DRAFT_0643at 637.184 kb on - strand, within EX28DRAFT_0643at 637.212 kb on + strand, within EX28DRAFT_0643at 637.228 kb on - strand, within EX28DRAFT_0643at 637.437 kb on + strand, within EX28DRAFT_0643at 637.437 kb on + strand, within EX28DRAFT_0643at 637.437 kb on + strand, within EX28DRAFT_0643at 637.437 kb on + strand, within EX28DRAFT_0643at 637.437 kb on + strand, within EX28DRAFT_0643at 637.438 kb on - strand, within EX28DRAFT_0643at 637.438 kb on - strand, within EX28DRAFT_0643at 637.438 kb on - strand, within EX28DRAFT_0643at 637.438 kb on - strand, within EX28DRAFT_0643at 637.686 kb on + strand, within EX28DRAFT_0643at 637.686 kb on + strand, within EX28DRAFT_0643at 637.687 kb on - strand, within EX28DRAFT_0643at 637.687 kb on - strand, within EX28DRAFT_0643at 637.687 kb on - strand, within EX28DRAFT_0643at 637.761 kb on - strand, within EX28DRAFT_0643at 637.855 kb on + strand, within EX28DRAFT_0643at 637.856 kb on - strand, within EX28DRAFT_0643at 637.859 kb on - strand, within EX28DRAFT_0643at 637.902 kb on + strand, within EX28DRAFT_0643at 638.030 kb on + strandat 638.030 kb on + strandat 638.030 kb on + strandat 638.031 kb on - strandat 638.031 kb on - strandat 638.031 kb on - strandat 638.031 kb on - strandat 638.031 kb on - strandat 638.033 kb on + strandat 638.033 kb on + strandat 638.033 kb on + strandat 638.033 kb on + strandat 638.034 kb on - strandat 638.034 kb on - strandat 638.034 kb on - strandat 638.034 kb on - strandat 638.069 kb on + strandat 638.128 kb on - strandat 638.133 kb on - strandat 638.140 kb on + strandat 638.141 kb on - strandat 638.159 kb on - strandat 638.159 kb on - strandat 638.260 kb on + strandat 638.260 kb on + strandat 638.260 kb on + strandat 638.338 kb on + strandat 638.339 kb on - strandat 638.339 kb on - strandat 638.339 kb on - strandat 638.414 kb on + strandat 638.414 kb on + strandat 638.414 kb on + strandat 638.415 kb on - strandat 638.415 kb on - strandat 638.448 kb on - strandat 638.515 kb on + strandat 638.642 kb on - strand, within EX28DRAFT_0644at 638.642 kb on - strand, within EX28DRAFT_0644at 638.698 kb on - strand, within EX28DRAFT_0644at 638.703 kb on + strand, within EX28DRAFT_0644at 638.703 kb on + strand, within EX28DRAFT_0644at 638.767 kb on - strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.788 kb on + strand, within EX28DRAFT_0644at 638.789 kb on - strand, within EX28DRAFT_0644at 638.813 kb on - strand, within EX28DRAFT_0644at 638.885 kb on + strand, within EX28DRAFT_0644at 638.885 kb on + strand, within EX28DRAFT_0644at 638.947 kb on + strand, within EX28DRAFT_0644at 638.947 kb on + strand, within EX28DRAFT_0644at 638.947 kb on + strand, within EX28DRAFT_0644at 638.947 kb on + strand, within EX28DRAFT_0644at 638.948 kb on - strand, within EX28DRAFT_0644at 638.948 kb on - strand, within EX28DRAFT_0644at 638.948 kb on - strand, within EX28DRAFT_0644at 638.990 kb on + strand, within EX28DRAFT_0644at 638.992 kb on + strand, within EX28DRAFT_0644

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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636,247 + EX28DRAFT_0642 0.39 -2.5
636,247 + EX28DRAFT_0642 0.39 +0.8
636,248 - EX28DRAFT_0642 0.39 -2.0
636,358 - EX28DRAFT_0642 0.51 -3.7
636,358 - EX28DRAFT_0642 0.51 +0.0
636,532 - EX28DRAFT_0642 0.70 -0.9
636,663 + EX28DRAFT_0642 0.84 -0.8
636,677 - EX28DRAFT_0642 0.86 +0.5
636,678 + EX28DRAFT_0642 0.86 +2.1
636,678 + EX28DRAFT_0642 0.86 -0.9
636,678 + EX28DRAFT_0642 0.86 -4.1
636,679 - EX28DRAFT_0642 0.86 +0.0
636,679 - EX28DRAFT_0642 0.86 -0.8
636,679 - EX28DRAFT_0642 0.86 +0.8
636,679 - EX28DRAFT_0642 0.86 +2.2
636,771 - +0.3
636,779 - +0.0
636,779 - -2.2
636,802 + +0.7
636,802 + -3.9
636,802 + +0.6
636,803 - +0.2
636,858 - +1.0
636,858 - -0.3
636,858 - -1.8
636,922 + -0.8
636,924 + +0.1
636,948 + +0.0
636,948 + +1.0
636,958 - -0.4
636,958 - +0.4
637,107 + EX28DRAFT_0643 0.18 -0.2
637,107 + EX28DRAFT_0643 0.18 +1.1
637,108 - EX28DRAFT_0643 0.18 +0.1
637,108 - EX28DRAFT_0643 0.18 -1.5
637,122 + EX28DRAFT_0643 0.19 +1.7
637,171 + EX28DRAFT_0643 0.23 +0.8
637,184 - EX28DRAFT_0643 0.25 -1.1
637,212 + EX28DRAFT_0643 0.27 -1.8
637,228 - EX28DRAFT_0643 0.29 +0.7
637,437 + EX28DRAFT_0643 0.47 -0.2
637,437 + EX28DRAFT_0643 0.47 +0.8
637,437 + EX28DRAFT_0643 0.47 +0.1
637,437 + EX28DRAFT_0643 0.47 -0.1
637,437 + EX28DRAFT_0643 0.47 -0.2
637,438 - EX28DRAFT_0643 0.47 -0.0
637,438 - EX28DRAFT_0643 0.47 -0.6
637,438 - EX28DRAFT_0643 0.47 -0.5
637,438 - EX28DRAFT_0643 0.47 +0.1
637,686 + EX28DRAFT_0643 0.69 -2.5
637,686 + EX28DRAFT_0643 0.69 +0.3
637,687 - EX28DRAFT_0643 0.69 -0.0
637,687 - EX28DRAFT_0643 0.69 -0.4
637,687 - EX28DRAFT_0643 0.69 -0.7
637,761 - EX28DRAFT_0643 0.76 -0.6
637,855 + EX28DRAFT_0643 0.84 -1.2
637,856 - EX28DRAFT_0643 0.84 -0.5
637,859 - EX28DRAFT_0643 0.85 -0.1
637,902 + EX28DRAFT_0643 0.89 -0.0
638,030 + +0.7
638,030 + -0.6
638,030 + +0.9
638,031 - -0.1
638,031 - -2.2
638,031 - +0.7
638,031 - +0.5
638,031 - -2.2
638,033 + -0.4
638,033 + -0.8
638,033 + -0.3
638,033 + -1.0
638,034 - -0.6
638,034 - +0.5
638,034 - -0.5
638,034 - -1.3
638,069 + -0.0
638,128 - +0.6
638,133 - +0.7
638,140 + +0.2
638,141 - +0.6
638,159 - +1.1
638,159 - +0.8
638,260 + -2.4
638,260 + -2.8
638,260 + +1.4
638,338 + +0.1
638,339 - +0.6
638,339 - +0.9
638,339 - +1.1
638,414 + +0.2
638,414 + +0.5
638,414 + +0.2
638,415 - +1.0
638,415 - -0.2
638,448 - -0.1
638,515 + +0.6
638,642 - EX28DRAFT_0644 0.28 +0.0
638,642 - EX28DRAFT_0644 0.28 -0.9
638,698 - EX28DRAFT_0644 0.36 -0.5
638,703 + EX28DRAFT_0644 0.37 -0.4
638,703 + EX28DRAFT_0644 0.37 -0.3
638,767 - EX28DRAFT_0644 0.47 -1.0
638,788 + EX28DRAFT_0644 0.50 +0.4
638,788 + EX28DRAFT_0644 0.50 -0.1
638,788 + EX28DRAFT_0644 0.50 -0.4
638,788 + EX28DRAFT_0644 0.50 -0.4
638,788 + EX28DRAFT_0644 0.50 -0.4
638,788 + EX28DRAFT_0644 0.50 +0.4
638,788 + EX28DRAFT_0644 0.50 +0.4
638,788 + EX28DRAFT_0644 0.50 -0.5
638,788 + EX28DRAFT_0644 0.50 -0.0
638,788 + EX28DRAFT_0644 0.50 -0.7
638,789 - EX28DRAFT_0644 0.50 +0.3
638,813 - EX28DRAFT_0644 0.54 -1.1
638,885 + EX28DRAFT_0644 0.64 -0.5
638,885 + EX28DRAFT_0644 0.64 -0.1
638,947 + EX28DRAFT_0644 0.74 +0.5
638,947 + EX28DRAFT_0644 0.74 +1.0
638,947 + EX28DRAFT_0644 0.74 +0.7
638,947 + EX28DRAFT_0644 0.74 -0.2
638,948 - EX28DRAFT_0644 0.74 +0.6
638,948 - EX28DRAFT_0644 0.74 -0.8
638,948 - EX28DRAFT_0644 0.74 +0.2
638,990 + EX28DRAFT_0644 0.80 +1.1
638,992 + EX28DRAFT_0644 0.80 +0.4

Or see this region's nucleotide sequence