Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0512

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0511 and EX28DRAFT_0512 are separated by 12 nucleotidesEX28DRAFT_0512 and EX28DRAFT_0513 are separated by 176 nucleotides EX28DRAFT_0511: EX28DRAFT_0511 - colanic acid biosynthesis glycosyltransferase WcaL, at 504,433 to 505,653 _0511 EX28DRAFT_0512: EX28DRAFT_0512 - colanic acid biosynthesis protein WcaM, at 505,666 to 507,057 _0512 EX28DRAFT_0513: EX28DRAFT_0513 - UDP-glucose pyrophosphorylase regulatory subunit, at 507,234 to 508,130 _0513 Position (kb) 505 506 507 508Strain fitness (log2 ratio) -1 0 1 2at 504.935 kb on - strand, within EX28DRAFT_0511at 505.428 kb on - strand, within EX28DRAFT_0511at 505.461 kb on + strand, within EX28DRAFT_0511at 505.461 kb on + strand, within EX28DRAFT_0511at 505.461 kb on + strand, within EX28DRAFT_0511at 505.665 kb on + strandat 505.665 kb on + strandat 505.666 kb on - strandat 505.666 kb on - strandat 505.979 kb on + strand, within EX28DRAFT_0512at 506.371 kb on + strand, within EX28DRAFT_0512at 506.372 kb on - strand, within EX28DRAFT_0512at 506.450 kb on + strand, within EX28DRAFT_0512at 506.478 kb on + strand, within EX28DRAFT_0512at 506.505 kb on + strand, within EX28DRAFT_0512at 506.507 kb on + strand, within EX28DRAFT_0512at 506.537 kb on + strand, within EX28DRAFT_0512at 506.561 kb on - strand, within EX28DRAFT_0512at 506.586 kb on + strand, within EX28DRAFT_0512at 506.637 kb on - strand, within EX28DRAFT_0512at 506.637 kb on - strand, within EX28DRAFT_0512at 506.647 kb on + strand, within EX28DRAFT_0512at 506.682 kb on + strand, within EX28DRAFT_0512at 506.710 kb on + strand, within EX28DRAFT_0512at 506.955 kb on + strandat 507.034 kb on - strandat 507.056 kb on - strandat 507.066 kb on + strandat 507.067 kb on - strandat 507.105 kb on + strandat 507.151 kb on + strandat 507.152 kb on - strandat 507.152 kb on - strandat 507.239 kb on + strandat 507.281 kb on + strandat 507.281 kb on + strandat 507.281 kb on + strandat 507.282 kb on - strandat 507.308 kb on + strandat 507.348 kb on + strand, within EX28DRAFT_0513at 507.506 kb on + strand, within EX28DRAFT_0513at 507.507 kb on - strand, within EX28DRAFT_0513at 507.507 kb on - strand, within EX28DRAFT_0513at 507.507 kb on - strand, within EX28DRAFT_0513at 507.572 kb on + strand, within EX28DRAFT_0513at 507.573 kb on - strand, within EX28DRAFT_0513at 507.642 kb on - strand, within EX28DRAFT_0513at 507.667 kb on - strand, within EX28DRAFT_0513at 507.754 kb on - strand, within EX28DRAFT_0513at 507.770 kb on + strand, within EX28DRAFT_0513at 507.868 kb on + strand, within EX28DRAFT_0513at 507.868 kb on + strand, within EX28DRAFT_0513at 507.869 kb on - strand, within EX28DRAFT_0513at 507.939 kb on - strand, within EX28DRAFT_0513at 507.993 kb on - strand, within EX28DRAFT_0513at 507.993 kb on - strand, within EX28DRAFT_0513at 508.015 kb on - strand, within EX28DRAFT_0513at 508.038 kb on + strand, within EX28DRAFT_0513at 508.039 kb on - strand, within EX28DRAFT_0513at 508.040 kb on + strand, within EX28DRAFT_0513at 508.040 kb on + strand, within EX28DRAFT_0513at 508.041 kb on - strandat 508.041 kb on - strandat 508.041 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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504,935 - EX28DRAFT_0511 0.41 +0.7
505,428 - EX28DRAFT_0511 0.81 -0.1
505,461 + EX28DRAFT_0511 0.84 +0.2
505,461 + EX28DRAFT_0511 0.84 +0.4
505,461 + EX28DRAFT_0511 0.84 -0.7
505,665 + -0.7
505,665 + +0.9
505,666 - -0.1
505,666 - -0.6
505,979 + EX28DRAFT_0512 0.22 -0.8
506,371 + EX28DRAFT_0512 0.51 -1.7
506,372 - EX28DRAFT_0512 0.51 -0.1
506,450 + EX28DRAFT_0512 0.56 +1.3
506,478 + EX28DRAFT_0512 0.58 +0.1
506,505 + EX28DRAFT_0512 0.60 -0.4
506,507 + EX28DRAFT_0512 0.60 +0.5
506,537 + EX28DRAFT_0512 0.63 +0.2
506,561 - EX28DRAFT_0512 0.64 +1.0
506,586 + EX28DRAFT_0512 0.66 +1.3
506,637 - EX28DRAFT_0512 0.70 +0.7
506,637 - EX28DRAFT_0512 0.70 -0.4
506,647 + EX28DRAFT_0512 0.70 -0.2
506,682 + EX28DRAFT_0512 0.73 -0.0
506,710 + EX28DRAFT_0512 0.75 +0.4
506,955 + +0.1
507,034 - +0.2
507,056 - +0.3
507,066 + +0.7
507,067 - +1.0
507,105 + -0.7
507,151 + +2.4
507,152 - +0.6
507,152 - +0.4
507,239 + +1.3
507,281 + -0.1
507,281 + +0.2
507,281 + +1.4
507,282 - -1.6
507,308 + +0.4
507,348 + EX28DRAFT_0513 0.13 -0.3
507,506 + EX28DRAFT_0513 0.30 +0.9
507,507 - EX28DRAFT_0513 0.30 +0.4
507,507 - EX28DRAFT_0513 0.30 +0.3
507,507 - EX28DRAFT_0513 0.30 +0.4
507,572 + EX28DRAFT_0513 0.38 +0.6
507,573 - EX28DRAFT_0513 0.38 +0.4
507,642 - EX28DRAFT_0513 0.45 +0.4
507,667 - EX28DRAFT_0513 0.48 +1.5
507,754 - EX28DRAFT_0513 0.58 +0.4
507,770 + EX28DRAFT_0513 0.60 -0.0
507,868 + EX28DRAFT_0513 0.71 -1.5
507,868 + EX28DRAFT_0513 0.71 +0.4
507,869 - EX28DRAFT_0513 0.71 +0.7
507,939 - EX28DRAFT_0513 0.79 +0.4
507,993 - EX28DRAFT_0513 0.85 -0.9
507,993 - EX28DRAFT_0513 0.85 +1.6
508,015 - EX28DRAFT_0513 0.87 +0.9
508,038 + EX28DRAFT_0513 0.90 +0.8
508,039 - EX28DRAFT_0513 0.90 +0.4
508,040 + EX28DRAFT_0513 0.90 +2.4
508,040 + EX28DRAFT_0513 0.90 +0.0
508,041 - +0.9
508,041 - +1.9
508,041 - +1.2

Or see this region's nucleotide sequence