Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0165

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0164 and EX28DRAFT_0165 are separated by 4 nucleotidesEX28DRAFT_0165 and EX28DRAFT_0166 are separated by 3 nucleotides EX28DRAFT_0164: EX28DRAFT_0164 - FOG: EAL domain, at 110,002 to 112,242 _0164 EX28DRAFT_0165: EX28DRAFT_0165 - exopolyphosphatase, at 112,247 to 113,785 _0165 EX28DRAFT_0166: EX28DRAFT_0166 - polyphosphate kinase 1, at 113,789 to 115,849 _0166 Position (kb) 112 113 114Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 111.334 kb on + strand, within EX28DRAFT_0164at 111.335 kb on - strand, within EX28DRAFT_0164at 111.335 kb on - strand, within EX28DRAFT_0164at 111.335 kb on - strand, within EX28DRAFT_0164at 111.335 kb on - strand, within EX28DRAFT_0164at 111.340 kb on + strand, within EX28DRAFT_0164at 111.340 kb on + strand, within EX28DRAFT_0164at 111.341 kb on - strand, within EX28DRAFT_0164at 111.341 kb on - strand, within EX28DRAFT_0164at 111.367 kb on + strand, within EX28DRAFT_0164at 111.602 kb on + strand, within EX28DRAFT_0164at 111.817 kb on + strand, within EX28DRAFT_0164at 111.818 kb on - strand, within EX28DRAFT_0164at 111.891 kb on - strand, within EX28DRAFT_0164at 111.927 kb on + strand, within EX28DRAFT_0164at 111.928 kb on - strand, within EX28DRAFT_0164at 111.928 kb on - strand, within EX28DRAFT_0164at 111.964 kb on + strand, within EX28DRAFT_0164at 111.964 kb on + strand, within EX28DRAFT_0164at 111.965 kb on - strand, within EX28DRAFT_0164at 112.112 kb on - strandat 112.130 kb on + strandat 112.130 kb on + strandat 112.131 kb on - strandat 112.131 kb on - strandat 112.135 kb on - strandat 112.162 kb on + strandat 112.162 kb on + strandat 112.163 kb on - strandat 112.627 kb on - strand, within EX28DRAFT_0165at 112.755 kb on + strand, within EX28DRAFT_0165at 112.756 kb on - strand, within EX28DRAFT_0165at 112.809 kb on + strand, within EX28DRAFT_0165at 112.926 kb on - strand, within EX28DRAFT_0165at 113.030 kb on - strand, within EX28DRAFT_0165at 113.259 kb on + strand, within EX28DRAFT_0165at 113.589 kb on - strand, within EX28DRAFT_0165at 113.770 kb on + strandat 113.786 kb on - strandat 113.823 kb on + strandat 113.898 kb on + strandat 113.899 kb on - strandat 113.899 kb on - strandat 113.899 kb on - strandat 114.036 kb on + strand, within EX28DRAFT_0166at 114.036 kb on + strand, within EX28DRAFT_0166at 114.037 kb on - strand, within EX28DRAFT_0166at 114.037 kb on - strand, within EX28DRAFT_0166at 114.046 kb on + strand, within EX28DRAFT_0166at 114.067 kb on + strand, within EX28DRAFT_0166at 114.068 kb on - strand, within EX28DRAFT_0166at 114.208 kb on - strand, within EX28DRAFT_0166at 114.208 kb on - strand, within EX28DRAFT_0166at 114.313 kb on - strand, within EX28DRAFT_0166at 114.453 kb on + strand, within EX28DRAFT_0166at 114.454 kb on - strand, within EX28DRAFT_0166at 114.735 kb on + strand, within EX28DRAFT_0166

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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111,334 + EX28DRAFT_0164 0.59 -0.3
111,335 - EX28DRAFT_0164 0.59 +1.0
111,335 - EX28DRAFT_0164 0.59 -0.1
111,335 - EX28DRAFT_0164 0.59 +0.1
111,335 - EX28DRAFT_0164 0.59 -0.2
111,340 + EX28DRAFT_0164 0.60 +0.9
111,340 + EX28DRAFT_0164 0.60 +0.3
111,341 - EX28DRAFT_0164 0.60 -0.9
111,341 - EX28DRAFT_0164 0.60 -2.7
111,367 + EX28DRAFT_0164 0.61 +0.1
111,602 + EX28DRAFT_0164 0.71 -0.3
111,817 + EX28DRAFT_0164 0.81 +0.3
111,818 - EX28DRAFT_0164 0.81 -0.1
111,891 - EX28DRAFT_0164 0.84 -0.7
111,927 + EX28DRAFT_0164 0.86 +0.5
111,928 - EX28DRAFT_0164 0.86 -0.6
111,928 - EX28DRAFT_0164 0.86 -0.7
111,964 + EX28DRAFT_0164 0.88 -3.1
111,964 + EX28DRAFT_0164 0.88 -0.3
111,965 - EX28DRAFT_0164 0.88 +0.2
112,112 - -0.2
112,130 + -3.1
112,130 + -0.4
112,131 - -0.9
112,131 - +0.8
112,135 - +0.3
112,162 + +0.8
112,162 + -0.1
112,163 - -4.2
112,627 - EX28DRAFT_0165 0.25 -1.4
112,755 + EX28DRAFT_0165 0.33 +0.3
112,756 - EX28DRAFT_0165 0.33 +0.6
112,809 + EX28DRAFT_0165 0.37 -0.1
112,926 - EX28DRAFT_0165 0.44 -1.1
113,030 - EX28DRAFT_0165 0.51 +1.6
113,259 + EX28DRAFT_0165 0.66 -0.5
113,589 - EX28DRAFT_0165 0.87 -1.9
113,770 + -0.7
113,786 - -0.4
113,823 + -0.1
113,898 + -1.4
113,899 - +1.1
113,899 - +0.3
113,899 - +0.6
114,036 + EX28DRAFT_0166 0.12 -2.5
114,036 + EX28DRAFT_0166 0.12 -0.3
114,037 - EX28DRAFT_0166 0.12 +1.0
114,037 - EX28DRAFT_0166 0.12 -0.1
114,046 + EX28DRAFT_0166 0.12 -2.1
114,067 + EX28DRAFT_0166 0.13 -0.3
114,068 - EX28DRAFT_0166 0.14 -0.1
114,208 - EX28DRAFT_0166 0.20 -0.2
114,208 - EX28DRAFT_0166 0.20 +1.1
114,313 - EX28DRAFT_0166 0.25 -0.5
114,453 + EX28DRAFT_0166 0.32 -0.5
114,454 - EX28DRAFT_0166 0.32 -3.0
114,735 + EX28DRAFT_0166 0.46 -0.6

Or see this region's nucleotide sequence