Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0135

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0134 and EX28DRAFT_0135 are separated by 55 nucleotidesEX28DRAFT_0135 and EX28DRAFT_0136 overlap by 4 nucleotidesEX28DRAFT_0136 and EX28DRAFT_0137 are separated by 0 nucleotides EX28DRAFT_0134: EX28DRAFT_0134 - amino acid/peptide transporter (Peptide:H+ symporter), bacterial, at 78,291 to 79,835 _0134 EX28DRAFT_0135: EX28DRAFT_0135 - replication restart DNA helicase PriA, at 79,891 to 80,112 _0135 EX28DRAFT_0136: EX28DRAFT_0136 - hypothetical protein, at 80,109 to 80,459 _0136 EX28DRAFT_0137: EX28DRAFT_0137 - Thermolysin metallopeptidase, alpha-helical domain/Thermolysin metallopeptidase, catalytic domain, at 80,460 to 81,479 _0137 Position (kb) 79 80 81Strain fitness (log2 ratio) -2 -1 0 1 2at 78.922 kb on - strand, within EX28DRAFT_0134at 79.117 kb on - strand, within EX28DRAFT_0134at 79.117 kb on - strand, within EX28DRAFT_0134at 79.125 kb on + strand, within EX28DRAFT_0134at 79.184 kb on + strand, within EX28DRAFT_0134at 79.264 kb on - strand, within EX28DRAFT_0134at 79.355 kb on + strand, within EX28DRAFT_0134at 79.356 kb on - strand, within EX28DRAFT_0134at 79.890 kb on + strandat 79.890 kb on + strandat 79.890 kb on + strandat 79.891 kb on - strandat 79.891 kb on - strandat 79.891 kb on - strandat 79.962 kb on + strand, within EX28DRAFT_0135at 79.963 kb on - strand, within EX28DRAFT_0135at 79.963 kb on - strand, within EX28DRAFT_0135at 79.965 kb on + strand, within EX28DRAFT_0135at 80.009 kb on + strand, within EX28DRAFT_0135at 80.009 kb on + strand, within EX28DRAFT_0135at 80.010 kb on - strand, within EX28DRAFT_0135at 80.018 kb on + strand, within EX28DRAFT_0135at 80.018 kb on + strand, within EX28DRAFT_0135at 80.022 kb on - strand, within EX28DRAFT_0135at 80.070 kb on + strand, within EX28DRAFT_0135at 80.070 kb on + strand, within EX28DRAFT_0135at 80.071 kb on - strand, within EX28DRAFT_0135at 80.076 kb on + strand, within EX28DRAFT_0135at 80.110 kb on + strandat 80.393 kb on + strand, within EX28DRAFT_0136at 80.461 kb on + strandat 80.461 kb on + strandat 80.462 kb on - strandat 80.462 kb on - strandat 80.605 kb on + strand, within EX28DRAFT_0137at 80.662 kb on + strand, within EX28DRAFT_0137at 80.890 kb on + strand, within EX28DRAFT_0137at 80.891 kb on - strand, within EX28DRAFT_0137at 80.956 kb on + strand, within EX28DRAFT_0137at 81.040 kb on - strand, within EX28DRAFT_0137at 81.109 kb on + strand, within EX28DRAFT_0137

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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78,922 - EX28DRAFT_0134 0.41 +1.0
79,117 - EX28DRAFT_0134 0.53 +1.6
79,117 - EX28DRAFT_0134 0.53 +0.4
79,125 + EX28DRAFT_0134 0.54 +0.3
79,184 + EX28DRAFT_0134 0.58 +0.4
79,264 - EX28DRAFT_0134 0.63 -0.4
79,355 + EX28DRAFT_0134 0.69 +0.6
79,356 - EX28DRAFT_0134 0.69 +1.1
79,890 + +0.4
79,890 + -0.1
79,890 + -0.3
79,891 - -1.5
79,891 - +0.2
79,891 - +0.2
79,962 + EX28DRAFT_0135 0.32 +0.9
79,963 - EX28DRAFT_0135 0.32 +0.2
79,963 - EX28DRAFT_0135 0.32 -1.1
79,965 + EX28DRAFT_0135 0.33 +0.4
80,009 + EX28DRAFT_0135 0.53 -0.2
80,009 + EX28DRAFT_0135 0.53 -0.5
80,010 - EX28DRAFT_0135 0.54 +1.3
80,018 + EX28DRAFT_0135 0.57 -0.9
80,018 + EX28DRAFT_0135 0.57 -0.4
80,022 - EX28DRAFT_0135 0.59 -1.0
80,070 + EX28DRAFT_0135 0.81 -1.1
80,070 + EX28DRAFT_0135 0.81 +0.5
80,071 - EX28DRAFT_0135 0.81 -0.4
80,076 + EX28DRAFT_0135 0.83 -0.0
80,110 + +0.8
80,393 + EX28DRAFT_0136 0.81 -0.8
80,461 + -0.5
80,461 + +0.3
80,462 - -0.5
80,462 - +2.6
80,605 + EX28DRAFT_0137 0.14 -1.9
80,662 + EX28DRAFT_0137 0.20 +1.6
80,890 + EX28DRAFT_0137 0.42 +0.6
80,891 - EX28DRAFT_0137 0.42 +1.6
80,956 + EX28DRAFT_0137 0.49 +0.1
81,040 - EX28DRAFT_0137 0.57 -0.1
81,109 + EX28DRAFT_0137 0.64 +1.3

Or see this region's nucleotide sequence