Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0104

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0103 and EX28DRAFT_0104 are separated by 125 nucleotidesEX28DRAFT_0104 and EX28DRAFT_0105 overlap by 10 nucleotides EX28DRAFT_0103: EX28DRAFT_0103 - Transcriptional antiterminator, at 43,914 to 45,191 _0103 EX28DRAFT_0104: EX28DRAFT_0104 - ABC-type uncharacterized transport system, periplasmic component, at 45,317 to 45,955 _0104 EX28DRAFT_0105: EX28DRAFT_0105 - ABC-type uncharacterized transport system, permease component, at 45,946 to 46,926 _0105 Position (kb) 45 46Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 44.400 kb on - strand, within EX28DRAFT_0103at 44.400 kb on - strand, within EX28DRAFT_0103at 44.401 kb on + strand, within EX28DRAFT_0103at 44.401 kb on + strand, within EX28DRAFT_0103at 44.401 kb on + strand, within EX28DRAFT_0103at 44.401 kb on + strand, within EX28DRAFT_0103at 44.401 kb on + strand, within EX28DRAFT_0103at 44.402 kb on - strand, within EX28DRAFT_0103at 44.402 kb on - strand, within EX28DRAFT_0103at 44.402 kb on - strand, within EX28DRAFT_0103at 44.402 kb on - strand, within EX28DRAFT_0103at 44.402 kb on - strand, within EX28DRAFT_0103at 44.402 kb on - strand, within EX28DRAFT_0103at 44.546 kb on + strand, within EX28DRAFT_0103at 44.634 kb on - strand, within EX28DRAFT_0103at 44.638 kb on + strand, within EX28DRAFT_0103at 44.719 kb on + strand, within EX28DRAFT_0103at 44.719 kb on + strand, within EX28DRAFT_0103at 44.728 kb on + strand, within EX28DRAFT_0103at 44.737 kb on - strand, within EX28DRAFT_0103at 44.821 kb on + strand, within EX28DRAFT_0103at 44.874 kb on - strand, within EX28DRAFT_0103at 45.040 kb on - strand, within EX28DRAFT_0103at 45.040 kb on - strand, within EX28DRAFT_0103at 45.041 kb on + strand, within EX28DRAFT_0103at 45.042 kb on - strand, within EX28DRAFT_0103at 45.042 kb on - strand, within EX28DRAFT_0103at 45.042 kb on - strand, within EX28DRAFT_0103at 45.042 kb on - strand, within EX28DRAFT_0103at 45.084 kb on + strandat 45.085 kb on - strandat 45.085 kb on - strandat 45.227 kb on - strandat 45.398 kb on - strand, within EX28DRAFT_0104at 45.494 kb on + strand, within EX28DRAFT_0104at 45.494 kb on + strand, within EX28DRAFT_0104at 45.494 kb on + strand, within EX28DRAFT_0104at 45.494 kb on + strand, within EX28DRAFT_0104at 45.494 kb on + strand, within EX28DRAFT_0104at 45.495 kb on - strand, within EX28DRAFT_0104at 45.495 kb on - strand, within EX28DRAFT_0104at 45.745 kb on + strand, within EX28DRAFT_0104at 45.745 kb on + strand, within EX28DRAFT_0104at 45.746 kb on - strand, within EX28DRAFT_0104at 45.749 kb on + strand, within EX28DRAFT_0104at 45.749 kb on + strand, within EX28DRAFT_0104at 45.749 kb on + strand, within EX28DRAFT_0104at 45.749 kb on + strand, within EX28DRAFT_0104at 45.749 kb on + strand, within EX28DRAFT_0104at 45.750 kb on - strand, within EX28DRAFT_0104at 45.750 kb on - strand, within EX28DRAFT_0104at 45.752 kb on + strand, within EX28DRAFT_0104at 45.752 kb on + strand, within EX28DRAFT_0104at 45.752 kb on + strand, within EX28DRAFT_0104at 45.753 kb on - strand, within EX28DRAFT_0104at 45.753 kb on - strand, within EX28DRAFT_0104at 45.753 kb on - strand, within EX28DRAFT_0104at 45.786 kb on + strand, within EX28DRAFT_0104at 45.787 kb on - strand, within EX28DRAFT_0104at 45.787 kb on - strand, within EX28DRAFT_0104at 45.832 kb on + strand, within EX28DRAFT_0104at 45.832 kb on + strand, within EX28DRAFT_0104at 45.833 kb on - strand, within EX28DRAFT_0104at 45.833 kb on - strand, within EX28DRAFT_0104at 45.833 kb on - strand, within EX28DRAFT_0104at 45.833 kb on - strand, within EX28DRAFT_0104at 45.833 kb on - strand, within EX28DRAFT_0104at 45.942 kb on + strandat 45.943 kb on - strandat 46.080 kb on + strand, within EX28DRAFT_0105at 46.081 kb on - strand, within EX28DRAFT_0105at 46.182 kb on + strand, within EX28DRAFT_0105at 46.183 kb on - strand, within EX28DRAFT_0105at 46.183 kb on - strand, within EX28DRAFT_0105at 46.186 kb on + strand, within EX28DRAFT_0105at 46.187 kb on - strand, within EX28DRAFT_0105at 46.284 kb on + strand, within EX28DRAFT_0105at 46.285 kb on - strand, within EX28DRAFT_0105at 46.352 kb on + strand, within EX28DRAFT_0105at 46.353 kb on - strand, within EX28DRAFT_0105at 46.605 kb on + strand, within EX28DRAFT_0105at 46.660 kb on - strand, within EX28DRAFT_0105at 46.660 kb on - strand, within EX28DRAFT_0105at 46.794 kb on + strand, within EX28DRAFT_0105at 46.929 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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44,400 - EX28DRAFT_0103 0.38 +0.5
44,400 - EX28DRAFT_0103 0.38 -0.3
44,401 + EX28DRAFT_0103 0.38 +0.1
44,401 + EX28DRAFT_0103 0.38 +0.1
44,401 + EX28DRAFT_0103 0.38 -3.3
44,401 + EX28DRAFT_0103 0.38 -0.2
44,401 + EX28DRAFT_0103 0.38 +0.5
44,402 - EX28DRAFT_0103 0.38 +0.1
44,402 - EX28DRAFT_0103 0.38 +0.5
44,402 - EX28DRAFT_0103 0.38 -0.7
44,402 - EX28DRAFT_0103 0.38 -0.0
44,402 - EX28DRAFT_0103 0.38 -1.1
44,402 - EX28DRAFT_0103 0.38 +0.3
44,546 + EX28DRAFT_0103 0.49 +0.6
44,634 - EX28DRAFT_0103 0.56 +0.3
44,638 + EX28DRAFT_0103 0.57 +1.1
44,719 + EX28DRAFT_0103 0.63 +0.5
44,719 + EX28DRAFT_0103 0.63 -1.9
44,728 + EX28DRAFT_0103 0.64 +0.0
44,737 - EX28DRAFT_0103 0.64 +0.1
44,821 + EX28DRAFT_0103 0.71 -0.4
44,874 - EX28DRAFT_0103 0.75 -0.7
45,040 - EX28DRAFT_0103 0.88 -0.5
45,040 - EX28DRAFT_0103 0.88 +1.0
45,041 + EX28DRAFT_0103 0.88 -0.5
45,042 - EX28DRAFT_0103 0.88 +0.8
45,042 - EX28DRAFT_0103 0.88 +1.3
45,042 - EX28DRAFT_0103 0.88 -0.6
45,042 - EX28DRAFT_0103 0.88 -0.5
45,084 + +1.1
45,085 - +1.4
45,085 - -0.7
45,227 - +1.2
45,398 - EX28DRAFT_0104 0.13 +0.2
45,494 + EX28DRAFT_0104 0.28 +0.1
45,494 + EX28DRAFT_0104 0.28 -0.5
45,494 + EX28DRAFT_0104 0.28 +0.5
45,494 + EX28DRAFT_0104 0.28 +0.3
45,494 + EX28DRAFT_0104 0.28 +0.1
45,495 - EX28DRAFT_0104 0.28 -0.6
45,495 - EX28DRAFT_0104 0.28 +0.7
45,745 + EX28DRAFT_0104 0.67 +0.1
45,745 + EX28DRAFT_0104 0.67 +1.6
45,746 - EX28DRAFT_0104 0.67 -0.0
45,749 + EX28DRAFT_0104 0.68 -0.5
45,749 + EX28DRAFT_0104 0.68 -0.1
45,749 + EX28DRAFT_0104 0.68 +2.4
45,749 + EX28DRAFT_0104 0.68 +0.8
45,749 + EX28DRAFT_0104 0.68 +1.2
45,750 - EX28DRAFT_0104 0.68 -2.3
45,750 - EX28DRAFT_0104 0.68 -0.1
45,752 + EX28DRAFT_0104 0.68 -0.1
45,752 + EX28DRAFT_0104 0.68 -0.3
45,752 + EX28DRAFT_0104 0.68 +0.4
45,753 - EX28DRAFT_0104 0.68 +0.3
45,753 - EX28DRAFT_0104 0.68 -0.8
45,753 - EX28DRAFT_0104 0.68 +1.6
45,786 + EX28DRAFT_0104 0.73 -0.3
45,787 - EX28DRAFT_0104 0.74 -0.7
45,787 - EX28DRAFT_0104 0.74 -1.3
45,832 + EX28DRAFT_0104 0.81 -0.3
45,832 + EX28DRAFT_0104 0.81 -3.5
45,833 - EX28DRAFT_0104 0.81 -1.6
45,833 - EX28DRAFT_0104 0.81 +0.3
45,833 - EX28DRAFT_0104 0.81 +0.1
45,833 - EX28DRAFT_0104 0.81 -1.9
45,833 - EX28DRAFT_0104 0.81 +1.9
45,942 + -1.9
45,943 - +0.2
46,080 + EX28DRAFT_0105 0.14 -0.6
46,081 - EX28DRAFT_0105 0.14 -0.5
46,182 + EX28DRAFT_0105 0.24 +1.5
46,183 - EX28DRAFT_0105 0.24 +2.9
46,183 - EX28DRAFT_0105 0.24 +0.1
46,186 + EX28DRAFT_0105 0.24 -0.3
46,187 - EX28DRAFT_0105 0.25 +0.4
46,284 + EX28DRAFT_0105 0.34 +0.2
46,285 - EX28DRAFT_0105 0.35 -2.9
46,352 + EX28DRAFT_0105 0.41 +0.4
46,353 - EX28DRAFT_0105 0.41 -0.9
46,605 + EX28DRAFT_0105 0.67 +0.2
46,660 - EX28DRAFT_0105 0.73 +0.3
46,660 - EX28DRAFT_0105 0.73 -2.9
46,794 + EX28DRAFT_0105 0.86 +0.9
46,929 + -0.8

Or see this region's nucleotide sequence