Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05900

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS05895 and ABIE41_RS05900 are separated by 140 nucleotidesABIE41_RS05900 and ABIE41_RS05905 are separated by 110 nucleotides ABIE41_RS05895: ABIE41_RS05895 - diaminopropionate ammonia-lyase, at 1,212,735 to 1,213,910 _RS05895 ABIE41_RS05900: ABIE41_RS05900 - gamma-glutamyltransferase, at 1,214,051 to 1,215,649 _RS05900 ABIE41_RS05905: ABIE41_RS05905 - ABC transporter substrate-binding protein, at 1,215,760 to 1,217,340 _RS05905 Position (kb) 1214 1215 1216Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1213.245 kb on + strand, within ABIE41_RS05895at 1213.245 kb on + strand, within ABIE41_RS05895at 1213.245 kb on + strand, within ABIE41_RS05895at 1213.245 kb on + strand, within ABIE41_RS05895at 1213.246 kb on - strand, within ABIE41_RS05895at 1213.246 kb on - strand, within ABIE41_RS05895at 1213.246 kb on - strand, within ABIE41_RS05895at 1213.310 kb on + strand, within ABIE41_RS05895at 1213.311 kb on - strand, within ABIE41_RS05895at 1213.359 kb on + strand, within ABIE41_RS05895at 1213.359 kb on + strand, within ABIE41_RS05895at 1213.359 kb on + strand, within ABIE41_RS05895at 1213.359 kb on + strand, within ABIE41_RS05895at 1213.360 kb on - strand, within ABIE41_RS05895at 1213.361 kb on + strand, within ABIE41_RS05895at 1213.361 kb on + strand, within ABIE41_RS05895at 1213.361 kb on + strand, within ABIE41_RS05895at 1213.362 kb on - strand, within ABIE41_RS05895at 1213.362 kb on - strand, within ABIE41_RS05895at 1213.608 kb on + strand, within ABIE41_RS05895at 1213.608 kb on + strand, within ABIE41_RS05895at 1213.608 kb on + strand, within ABIE41_RS05895at 1213.609 kb on - strand, within ABIE41_RS05895at 1213.609 kb on - strand, within ABIE41_RS05895at 1213.609 kb on - strand, within ABIE41_RS05895at 1213.609 kb on - strand, within ABIE41_RS05895at 1213.879 kb on - strandat 1213.879 kb on - strandat 1213.919 kb on - strandat 1213.987 kb on + strandat 1213.987 kb on + strandat 1213.988 kb on - strandat 1213.988 kb on - strandat 1213.988 kb on - strandat 1214.046 kb on + strandat 1214.047 kb on - strandat 1214.047 kb on - strandat 1214.047 kb on - strandat 1214.081 kb on - strandat 1214.081 kb on - strandat 1214.361 kb on - strand, within ABIE41_RS05900at 1214.425 kb on + strand, within ABIE41_RS05900at 1214.425 kb on + strand, within ABIE41_RS05900at 1214.471 kb on + strand, within ABIE41_RS05900at 1214.570 kb on + strand, within ABIE41_RS05900at 1214.571 kb on - strand, within ABIE41_RS05900at 1214.571 kb on - strand, within ABIE41_RS05900at 1214.636 kb on + strand, within ABIE41_RS05900at 1214.636 kb on + strand, within ABIE41_RS05900at 1214.636 kb on + strand, within ABIE41_RS05900at 1214.636 kb on + strand, within ABIE41_RS05900at 1214.636 kb on + strand, within ABIE41_RS05900at 1214.637 kb on - strand, within ABIE41_RS05900at 1214.637 kb on - strand, within ABIE41_RS05900at 1214.753 kb on + strand, within ABIE41_RS05900at 1214.753 kb on + strand, within ABIE41_RS05900at 1215.023 kb on + strand, within ABIE41_RS05900at 1215.023 kb on + strand, within ABIE41_RS05900at 1215.023 kb on + strand, within ABIE41_RS05900at 1215.023 kb on + strand, within ABIE41_RS05900at 1215.024 kb on - strand, within ABIE41_RS05900at 1215.024 kb on - strand, within ABIE41_RS05900at 1215.024 kb on - strand, within ABIE41_RS05900at 1215.024 kb on - strand, within ABIE41_RS05900at 1215.024 kb on - strand, within ABIE41_RS05900at 1215.024 kb on - strand, within ABIE41_RS05900at 1215.657 kb on + strandat 1215.658 kb on - strandat 1215.658 kb on - strandat 1215.751 kb on + strandat 1215.752 kb on - strandat 1215.936 kb on - strand, within ABIE41_RS05905at 1215.977 kb on + strand, within ABIE41_RS05905at 1215.977 kb on + strand, within ABIE41_RS05905at 1215.978 kb on - strand, within ABIE41_RS05905at 1216.019 kb on + strand, within ABIE41_RS05905at 1216.019 kb on + strand, within ABIE41_RS05905at 1216.019 kb on + strand, within ABIE41_RS05905at 1216.020 kb on - strand, within ABIE41_RS05905at 1216.020 kb on - strand, within ABIE41_RS05905at 1216.182 kb on - strand, within ABIE41_RS05905at 1216.182 kb on - strand, within ABIE41_RS05905at 1216.182 kb on - strand, within ABIE41_RS05905at 1216.253 kb on + strand, within ABIE41_RS05905at 1216.254 kb on - strand, within ABIE41_RS05905at 1216.325 kb on + strand, within ABIE41_RS05905at 1216.325 kb on + strand, within ABIE41_RS05905at 1216.325 kb on + strand, within ABIE41_RS05905at 1216.325 kb on + strand, within ABIE41_RS05905at 1216.325 kb on + strand, within ABIE41_RS05905at 1216.326 kb on - strand, within ABIE41_RS05905at 1216.326 kb on - strand, within ABIE41_RS05905at 1216.326 kb on - strand, within ABIE41_RS05905at 1216.328 kb on + strand, within ABIE41_RS05905at 1216.329 kb on - strand, within ABIE41_RS05905at 1216.329 kb on - strand, within ABIE41_RS05905at 1216.329 kb on - strand, within ABIE41_RS05905at 1216.401 kb on + strand, within ABIE41_RS05905at 1216.401 kb on + strand, within ABIE41_RS05905at 1216.401 kb on + strand, within ABIE41_RS05905at 1216.401 kb on + strand, within ABIE41_RS05905at 1216.401 kb on + strand, within ABIE41_RS05905at 1216.401 kb on + strand, within ABIE41_RS05905at 1216.401 kb on + strand, within ABIE41_RS05905at 1216.402 kb on - strand, within ABIE41_RS05905at 1216.402 kb on - strand, within ABIE41_RS05905at 1216.402 kb on - strand, within ABIE41_RS05905at 1216.402 kb on - strand, within ABIE41_RS05905at 1216.402 kb on - strand, within ABIE41_RS05905at 1216.402 kb on - strand, within ABIE41_RS05905at 1216.403 kb on + strand, within ABIE41_RS05905at 1216.403 kb on + strand, within ABIE41_RS05905at 1216.403 kb on + strand, within ABIE41_RS05905at 1216.403 kb on + strand, within ABIE41_RS05905at 1216.403 kb on + strand, within ABIE41_RS05905at 1216.403 kb on + strand, within ABIE41_RS05905at 1216.404 kb on - strand, within ABIE41_RS05905at 1216.404 kb on - strand, within ABIE41_RS05905at 1216.404 kb on - strand, within ABIE41_RS05905at 1216.404 kb on - strand, within ABIE41_RS05905

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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1,213,245 + ABIE41_RS05895 0.43 -0.6
1,213,245 + ABIE41_RS05895 0.43 -2.9
1,213,245 + ABIE41_RS05895 0.43 -0.0
1,213,245 + ABIE41_RS05895 0.43 +0.2
1,213,246 - ABIE41_RS05895 0.43 -1.4
1,213,246 - ABIE41_RS05895 0.43 +0.6
1,213,246 - ABIE41_RS05895 0.43 +0.1
1,213,310 + ABIE41_RS05895 0.49 -0.8
1,213,311 - ABIE41_RS05895 0.49 -0.0
1,213,359 + ABIE41_RS05895 0.53 -0.4
1,213,359 + ABIE41_RS05895 0.53 +0.6
1,213,359 + ABIE41_RS05895 0.53 +0.9
1,213,359 + ABIE41_RS05895 0.53 +0.0
1,213,360 - ABIE41_RS05895 0.53 +1.3
1,213,361 + ABIE41_RS05895 0.53 -0.0
1,213,361 + ABIE41_RS05895 0.53 +1.6
1,213,361 + ABIE41_RS05895 0.53 +2.2
1,213,362 - ABIE41_RS05895 0.53 +0.6
1,213,362 - ABIE41_RS05895 0.53 -1.0
1,213,608 + ABIE41_RS05895 0.74 +0.8
1,213,608 + ABIE41_RS05895 0.74 -0.4
1,213,608 + ABIE41_RS05895 0.74 -0.4
1,213,609 - ABIE41_RS05895 0.74 -0.0
1,213,609 - ABIE41_RS05895 0.74 -0.0
1,213,609 - ABIE41_RS05895 0.74 +0.2
1,213,609 - ABIE41_RS05895 0.74 +0.1
1,213,879 - +0.3
1,213,879 - -0.7
1,213,919 - +0.0
1,213,987 + +0.0
1,213,987 + -0.6
1,213,988 - -0.8
1,213,988 - -0.7
1,213,988 - -0.4
1,214,046 + -0.6
1,214,047 - -0.2
1,214,047 - +0.4
1,214,047 - +0.2
1,214,081 - +0.1
1,214,081 - +1.1
1,214,361 - ABIE41_RS05900 0.19 -0.4
1,214,425 + ABIE41_RS05900 0.23 -0.9
1,214,425 + ABIE41_RS05900 0.23 +0.1
1,214,471 + ABIE41_RS05900 0.26 +0.6
1,214,570 + ABIE41_RS05900 0.32 -2.3
1,214,571 - ABIE41_RS05900 0.33 -0.2
1,214,571 - ABIE41_RS05900 0.33 -1.3
1,214,636 + ABIE41_RS05900 0.37 +0.4
1,214,636 + ABIE41_RS05900 0.37 -1.4
1,214,636 + ABIE41_RS05900 0.37 -2.1
1,214,636 + ABIE41_RS05900 0.37 -1.8
1,214,636 + ABIE41_RS05900 0.37 -2.1
1,214,637 - ABIE41_RS05900 0.37 +0.3
1,214,637 - ABIE41_RS05900 0.37 +0.4
1,214,753 + ABIE41_RS05900 0.44 +0.9
1,214,753 + ABIE41_RS05900 0.44 -1.0
1,215,023 + ABIE41_RS05900 0.61 -1.6
1,215,023 + ABIE41_RS05900 0.61 +0.2
1,215,023 + ABIE41_RS05900 0.61 +0.4
1,215,023 + ABIE41_RS05900 0.61 -2.9
1,215,024 - ABIE41_RS05900 0.61 -1.1
1,215,024 - ABIE41_RS05900 0.61 -0.4
1,215,024 - ABIE41_RS05900 0.61 -0.4
1,215,024 - ABIE41_RS05900 0.61 +0.3
1,215,024 - ABIE41_RS05900 0.61 -0.4
1,215,024 - ABIE41_RS05900 0.61 -0.4
1,215,657 + +0.2
1,215,658 - +0.3
1,215,658 - +1.8
1,215,751 + -1.3
1,215,752 - +0.4
1,215,936 - ABIE41_RS05905 0.11 -0.6
1,215,977 + ABIE41_RS05905 0.14 -0.9
1,215,977 + ABIE41_RS05905 0.14 -0.7
1,215,978 - ABIE41_RS05905 0.14 +1.1
1,216,019 + ABIE41_RS05905 0.16 +0.2
1,216,019 + ABIE41_RS05905 0.16 -0.5
1,216,019 + ABIE41_RS05905 0.16 -0.4
1,216,020 - ABIE41_RS05905 0.16 -0.3
1,216,020 - ABIE41_RS05905 0.16 -0.4
1,216,182 - ABIE41_RS05905 0.27 -0.6
1,216,182 - ABIE41_RS05905 0.27 -0.4
1,216,182 - ABIE41_RS05905 0.27 -2.0
1,216,253 + ABIE41_RS05905 0.31 +0.9
1,216,254 - ABIE41_RS05905 0.31 +1.1
1,216,325 + ABIE41_RS05905 0.36 -0.2
1,216,325 + ABIE41_RS05905 0.36 -0.7
1,216,325 + ABIE41_RS05905 0.36 -0.1
1,216,325 + ABIE41_RS05905 0.36 -0.8
1,216,325 + ABIE41_RS05905 0.36 -1.2
1,216,326 - ABIE41_RS05905 0.36 +0.5
1,216,326 - ABIE41_RS05905 0.36 +0.0
1,216,326 - ABIE41_RS05905 0.36 +0.3
1,216,328 + ABIE41_RS05905 0.36 +0.6
1,216,329 - ABIE41_RS05905 0.36 +0.6
1,216,329 - ABIE41_RS05905 0.36 +0.0
1,216,329 - ABIE41_RS05905 0.36 +0.1
1,216,401 + ABIE41_RS05905 0.41 -0.1
1,216,401 + ABIE41_RS05905 0.41 -0.3
1,216,401 + ABIE41_RS05905 0.41 -0.7
1,216,401 + ABIE41_RS05905 0.41 -1.0
1,216,401 + ABIE41_RS05905 0.41 +0.4
1,216,401 + ABIE41_RS05905 0.41 +1.6
1,216,401 + ABIE41_RS05905 0.41 +0.5
1,216,402 - ABIE41_RS05905 0.41 +0.9
1,216,402 - ABIE41_RS05905 0.41 -0.6
1,216,402 - ABIE41_RS05905 0.41 +0.6
1,216,402 - ABIE41_RS05905 0.41 -0.3
1,216,402 - ABIE41_RS05905 0.41 -0.2
1,216,402 - ABIE41_RS05905 0.41 +0.6
1,216,403 + ABIE41_RS05905 0.41 -2.7
1,216,403 + ABIE41_RS05905 0.41 +0.7
1,216,403 + ABIE41_RS05905 0.41 +0.8
1,216,403 + ABIE41_RS05905 0.41 +0.3
1,216,403 + ABIE41_RS05905 0.41 -0.1
1,216,403 + ABIE41_RS05905 0.41 -0.8
1,216,404 - ABIE41_RS05905 0.41 +0.6
1,216,404 - ABIE41_RS05905 0.41 +0.6
1,216,404 - ABIE41_RS05905 0.41 +0.4
1,216,404 - ABIE41_RS05905 0.41 -1.4

Or see this region's nucleotide sequence