Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28155

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28150 and ABID97_RS28155 are separated by 117 nucleotidesABID97_RS28155 and ABID97_RS28160 are separated by 97 nucleotides ABID97_RS28150: ABID97_RS28150 - 3-deoxy-7-phosphoheptulonate synthase, at 548,552 to 549,679 _RS28150 ABID97_RS28155: ABID97_RS28155 - YihY/virulence factor BrkB family protein, at 549,797 to 550,933 _RS28155 ABID97_RS28160: ABID97_RS28160 - sensor domain-containing diguanylate cyclase, at 551,031 to 552,563 _RS28160 Position (kb) 549 550 551Strain fitness (log2 ratio) -1 0 1at 549.300 kb on + strand, within ABID97_RS28150at 549.301 kb on - strand, within ABID97_RS28150at 549.340 kb on - strand, within ABID97_RS28150at 550.111 kb on - strand, within ABID97_RS28155at 550.155 kb on + strand, within ABID97_RS28155at 550.231 kb on - strand, within ABID97_RS28155at 550.333 kb on - strand, within ABID97_RS28155at 550.836 kb on + strandat 550.837 kb on - strandat 551.033 kb on - strandat 551.033 kb on - strandat 551.092 kb on + strandat 551.405 kb on - strand, within ABID97_RS28160at 551.416 kb on + strand, within ABID97_RS28160at 551.863 kb on + strand, within ABID97_RS28160at 551.863 kb on + strand, within ABID97_RS28160

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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549,300 + ABID97_RS28150 0.66 -0.9
549,301 - ABID97_RS28150 0.66 +0.5
549,340 - ABID97_RS28150 0.70 +0.1
550,111 - ABID97_RS28155 0.28 -0.1
550,155 + ABID97_RS28155 0.31 -0.1
550,231 - ABID97_RS28155 0.38 -0.0
550,333 - ABID97_RS28155 0.47 +0.2
550,836 + -0.4
550,837 - +0.1
551,033 - -0.1
551,033 - +0.6
551,092 + +0.3
551,405 - ABID97_RS28160 0.24 +0.1
551,416 + ABID97_RS28160 0.25 -0.4
551,863 + ABID97_RS28160 0.54 -0.2
551,863 + ABID97_RS28160 0.54 -0.4

Or see this region's nucleotide sequence