Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27465

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27455 and ABID97_RS27460 overlap by 4 nucleotidesABID97_RS27460 and ABID97_RS27465 are separated by 14 nucleotidesABID97_RS27465 and ABID97_RS27470 are separated by 43 nucleotides ABID97_RS27455: ABID97_RS27455 - biotin-independent malonate decarboxylase subunit beta, at 408,067 to 408,948 _RS27455 ABID97_RS27460: ABID97_RS27460 - malonate decarboxylase acyl carrier protein, at 408,945 to 409,277 _RS27460 ABID97_RS27465: ABID97_RS27465 - malonate decarboxylase subunit alpha, at 409,292 to 410,974 _RS27465 ABID97_RS27470: ABID97_RS27470 - SLC13 family permease, at 411,018 to 412,391 _RS27470 Position (kb) 409 410 411Strain fitness (log2 ratio) -1 0 1at 408.938 kb on + strandat 410.013 kb on + strand, within ABID97_RS27465at 410.152 kb on - strand, within ABID97_RS27465at 410.229 kb on + strand, within ABID97_RS27465at 410.229 kb on + strand, within ABID97_RS27465at 410.487 kb on + strand, within ABID97_RS27465at 411.080 kb on - strandat 411.080 kb on - strandat 411.412 kb on + strand, within ABID97_RS27470at 411.413 kb on - strand, within ABID97_RS27470at 411.925 kb on + strand, within ABID97_RS27470at 411.926 kb on - strand, within ABID97_RS27470

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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408,938 + +0.2
410,013 + ABID97_RS27465 0.43 +0.9
410,152 - ABID97_RS27465 0.51 +1.0
410,229 + ABID97_RS27465 0.56 +0.9
410,229 + ABID97_RS27465 0.56 -0.1
410,487 + ABID97_RS27465 0.71 +0.8
411,080 - +0.0
411,080 - +0.2
411,412 + ABID97_RS27470 0.29 -1.6
411,413 - ABID97_RS27470 0.29 +0.2
411,925 + ABID97_RS27470 0.66 -0.1
411,926 - ABID97_RS27470 0.66 +1.0

Or see this region's nucleotide sequence