Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27055 and ABID97_RS27060 overlap by 41 nucleotides ABID97_RS27060 and ABID97_RS27065 are separated by 21 nucleotides ABID97_RS27065 and ABID97_RS27070 are separated by 32 nucleotides ABID97_RS27070 and ABID97_RS27075 are separated by 50 nucleotides
ABID97_RS27055: ABID97_RS27055 - MFS transporter, at 330,145 to 331,395
_RS27055
ABID97_RS27060: ABID97_RS27060 - hypothetical protein, at 331,355 to 331,969
_RS27060
ABID97_RS27065: ABID97_RS27065 - thioredoxin family protein, at 331,991 to 332,797
_RS27065
ABID97_RS27070: ABID97_RS27070 - hypothetical protein, at 332,830 to 333,513
_RS27070
ABID97_RS27075: ABID97_RS27075 - helix-turn-helix domain-containing protein, at 333,564 to 334,784
_RS27075
Position (kb) 331
332
333 Strain fitness (log2 ratio) -1
0
1 at 331.088 kb on - strand, within ABID97_RS27055 at 331.274 kb on - strand at 331.285 kb on + strand at 331.285 kb on + strand at 332.185 kb on - strand, within ABID97_RS27065 at 332.193 kb on + strand, within ABID97_RS27065 at 332.278 kb on - strand, within ABID97_RS27065 at 332.284 kb on - strand, within ABID97_RS27065 at 332.344 kb on - strand, within ABID97_RS27065 at 332.625 kb on + strand, within ABID97_RS27065 at 332.626 kb on - strand, within ABID97_RS27065 at 333.275 kb on + strand, within ABID97_RS27070 at 333.276 kb on - strand, within ABID97_RS27070 at 333.441 kb on - strand, within ABID97_RS27070 at 333.565 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 331,088 - ABID97_RS27055 0.75 +0.9 331,274 - +1.0 331,285 + -0.2 331,285 + +0.0 332,185 - ABID97_RS27065 0.24 -0.1 332,193 + ABID97_RS27065 0.25 +0.0 332,278 - ABID97_RS27065 0.36 +0.0 332,284 - ABID97_RS27065 0.36 +0.4 332,344 - ABID97_RS27065 0.44 +0.3 332,625 + ABID97_RS27065 0.79 +0.2 332,626 - ABID97_RS27065 0.79 +1.3 333,275 + ABID97_RS27070 0.65 +0.6 333,276 - ABID97_RS27070 0.65 +0.6 333,441 - ABID97_RS27070 0.89 +0.5 333,565 + -0.1
Or see this region's nucleotide sequence