Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27050

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27045 and ABID97_RS27050 are separated by 142 nucleotidesABID97_RS27050 and ABID97_RS27055 are separated by 30 nucleotides ABID97_RS27045: ABID97_RS27045 - TauD/TfdA family dioxygenase, at 328,026 to 328,919 _RS27045 ABID97_RS27050: ABID97_RS27050 - AraC family transcriptional regulator ligand-binding domain-containing protein, at 329,062 to 330,114 _RS27050 ABID97_RS27055: ABID97_RS27055 - MFS transporter, at 330,145 to 331,395 _RS27055 Position (kb) 329 330 331Strain fitness (log2 ratio) -1 0 1at 328.192 kb on + strand, within ABID97_RS27045at 328.192 kb on + strand, within ABID97_RS27045at 328.193 kb on - strand, within ABID97_RS27045at 328.223 kb on - strand, within ABID97_RS27045at 328.292 kb on - strand, within ABID97_RS27045at 328.516 kb on + strand, within ABID97_RS27045at 330.094 kb on + strandat 330.934 kb on + strand, within ABID97_RS27055at 331.088 kb on - strand, within ABID97_RS27055

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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328,192 + ABID97_RS27045 0.19 -0.2
328,192 + ABID97_RS27045 0.19 -0.3
328,193 - ABID97_RS27045 0.19 +0.1
328,223 - ABID97_RS27045 0.22 +0.4
328,292 - ABID97_RS27045 0.30 +1.4
328,516 + ABID97_RS27045 0.55 -0.5
330,094 + -0.5
330,934 + ABID97_RS27055 0.63 +1.0
331,088 - ABID97_RS27055 0.75 +0.9

Or see this region's nucleotide sequence