Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26230 and ABID97_RS26235 overlap by 4 nucleotides ABID97_RS26235 and ABID97_RS26240 are separated by 37 nucleotides
ABID97_RS26230: ABID97_RS26230 - LysR family transcriptional regulator, at 171,125 to 172,042
_RS26230
ABID97_RS26235: ABID97_RS26235 - SLAC1 anion channel family protein, at 172,039 to 173,034
_RS26235
ABID97_RS26240: ABID97_RS26240 - SDR family NAD(P)-dependent oxidoreductase, at 173,072 to 174,082
_RS26240
Position (kb) 172
173
174 Strain fitness (log2 ratio) -1
0
1 at 171.056 kb on - strand at 171.335 kb on - strand, within ABID97_RS26230 at 171.508 kb on - strand, within ABID97_RS26230 at 171.609 kb on - strand, within ABID97_RS26230 at 171.609 kb on - strand, within ABID97_RS26230 at 171.666 kb on + strand, within ABID97_RS26230 at 171.686 kb on - strand, within ABID97_RS26230 at 171.686 kb on - strand, within ABID97_RS26230 at 172.041 kb on - strand at 172.057 kb on + strand at 172.058 kb on - strand at 172.310 kb on + strand, within ABID97_RS26235 at 172.310 kb on + strand, within ABID97_RS26235 at 172.531 kb on + strand, within ABID97_RS26235 at 172.773 kb on + strand, within ABID97_RS26235 at 172.978 kb on + strand at 173.203 kb on - strand, within ABID97_RS26240 at 173.636 kb on + strand, within ABID97_RS26240
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 171,056 - +0.1 171,335 - ABID97_RS26230 0.23 -0.5 171,508 - ABID97_RS26230 0.42 +0.0 171,609 - ABID97_RS26230 0.53 +0.3 171,609 - ABID97_RS26230 0.53 +1.3 171,666 + ABID97_RS26230 0.59 -0.2 171,686 - ABID97_RS26230 0.61 -0.7 171,686 - ABID97_RS26230 0.61 +0.2 172,041 - -0.3 172,057 + -0.0 172,058 - -0.3 172,310 + ABID97_RS26235 0.27 +0.7 172,310 + ABID97_RS26235 0.27 -0.5 172,531 + ABID97_RS26235 0.49 +0.6 172,773 + ABID97_RS26235 0.74 -0.0 172,978 + +0.8 173,203 - ABID97_RS26240 0.13 -0.3 173,636 + ABID97_RS26240 0.56 -0.2
Or see this region's nucleotide sequence