Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26160 and ABID97_RS26165 are separated by 48 nucleotides ABID97_RS26165 and ABID97_RS26170 overlap by 11 nucleotides ABID97_RS26170 and ABID97_RS26175 are separated by 215 nucleotides ABID97_RS26175 and ABID97_RS26180 are separated by 261 nucleotides
ABID97_RS26160: ABID97_RS26160 - nuclear transport factor 2 family protein, at 158,281 to 158,670
_RS26160
ABID97_RS26165: ABID97_RS26165 - NAD(P)H-binding protein, at 158,719 to 159,366
_RS26165
ABID97_RS26170: ABID97_RS26170 - ATP-binding protein, at 159,356 to 161,425
_RS26170
ABID97_RS26175: ABID97_RS26175 - phage protein NinX family protein, at 161,641 to 162,066
_RS26175
ABID97_RS26180: ABID97_RS26180 - hypothetical protein, at 162,328 to 162,543
_RS26180
Position (kb) 159
160
161
162 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 158.642 kb on - strand at 158.642 kb on - strand at 159.031 kb on + strand, within ABID97_RS26165 at 159.031 kb on + strand, within ABID97_RS26165 at 159.031 kb on + strand, within ABID97_RS26165 at 159.031 kb on + strand, within ABID97_RS26165 at 159.032 kb on - strand, within ABID97_RS26165 at 159.080 kb on - strand, within ABID97_RS26165 at 159.398 kb on + strand at 159.399 kb on - strand at 160.083 kb on + strand, within ABID97_RS26170 at 160.084 kb on - strand, within ABID97_RS26170 at 160.084 kb on - strand, within ABID97_RS26170 at 160.196 kb on + strand, within ABID97_RS26170 at 160.196 kb on + strand, within ABID97_RS26170 at 160.410 kb on - strand, within ABID97_RS26170 at 160.633 kb on - strand, within ABID97_RS26170 at 161.100 kb on + strand, within ABID97_RS26170 at 161.100 kb on + strand, within ABID97_RS26170 at 161.101 kb on - strand, within ABID97_RS26170 at 161.101 kb on - strand, within ABID97_RS26170 at 161.157 kb on + strand, within ABID97_RS26170 at 161.238 kb on + strand at 161.481 kb on - strand at 161.716 kb on + strand, within ABID97_RS26175 at 161.738 kb on - strand, within ABID97_RS26175 at 161.738 kb on - strand, within ABID97_RS26175 at 161.740 kb on + strand, within ABID97_RS26175 at 161.741 kb on - strand, within ABID97_RS26175 at 161.741 kb on - strand, within ABID97_RS26175 at 161.885 kb on - strand, within ABID97_RS26175 at 161.993 kb on - strand, within ABID97_RS26175 at 162.052 kb on - strand at 162.065 kb on - strand at 162.221 kb on + strand at 162.222 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 158,642 - +0.3 158,642 - -0.3 159,031 + ABID97_RS26165 0.48 +0.6 159,031 + ABID97_RS26165 0.48 -0.5 159,031 + ABID97_RS26165 0.48 -0.1 159,031 + ABID97_RS26165 0.48 -0.1 159,032 - ABID97_RS26165 0.48 -0.7 159,080 - ABID97_RS26165 0.56 +4.2 159,398 + -0.0 159,399 - -0.2 160,083 + ABID97_RS26170 0.35 +0.4 160,084 - ABID97_RS26170 0.35 +0.6 160,084 - ABID97_RS26170 0.35 +0.6 160,196 + ABID97_RS26170 0.41 +0.4 160,196 + ABID97_RS26170 0.41 -0.4 160,410 - ABID97_RS26170 0.51 -0.7 160,633 - ABID97_RS26170 0.62 -0.1 161,100 + ABID97_RS26170 0.84 +0.2 161,100 + ABID97_RS26170 0.84 -0.6 161,101 - ABID97_RS26170 0.84 +0.3 161,101 - ABID97_RS26170 0.84 +1.4 161,157 + ABID97_RS26170 0.87 +0.2 161,238 + +0.1 161,481 - -0.0 161,716 + ABID97_RS26175 0.18 +0.0 161,738 - ABID97_RS26175 0.23 -0.2 161,738 - ABID97_RS26175 0.23 -0.1 161,740 + ABID97_RS26175 0.23 -0.4 161,741 - ABID97_RS26175 0.23 +0.4 161,741 - ABID97_RS26175 0.23 -0.0 161,885 - ABID97_RS26175 0.57 +2.7 161,993 - ABID97_RS26175 0.83 +0.2 162,052 - -0.7 162,065 - -0.1 162,221 + -1.5 162,222 - +0.2
Or see this region's nucleotide sequence