Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23025 and ABID97_RS23030 are separated by 340 nucleotides ABID97_RS23030 and ABID97_RS23035 overlap by 4 nucleotides ABID97_RS23035 and ABID97_RS23040 overlap by 4 nucleotides
ABID97_RS23025: ABID97_RS23025 - sugar transferase, at 4,765,470 to 4,766,183
_RS23025
ABID97_RS23030: ABID97_RS23030 - polysaccharide biosynthesis tyrosine autokinase, at 4,766,524 to 4,768,776
_RS23030
ABID97_RS23035: ABID97_RS23035 - low molecular weight protein-tyrosine-phosphatase, at 4,768,773 to 4,769,228
_RS23035
ABID97_RS23040: ABID97_RS23040 - polysaccharide biosynthesis/export family protein, at 4,769,225 to 4,770,388
_RS23040
Position (kb) 4766
4767
4768
4769 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4765.555 kb on + strand, within ABID97_RS23025 at 4765.556 kb on - strand, within ABID97_RS23025 at 4765.585 kb on + strand, within ABID97_RS23025 at 4765.585 kb on + strand, within ABID97_RS23025 at 4765.585 kb on + strand, within ABID97_RS23025 at 4765.586 kb on - strand, within ABID97_RS23025 at 4765.648 kb on + strand, within ABID97_RS23025 at 4765.648 kb on + strand, within ABID97_RS23025 at 4765.648 kb on + strand, within ABID97_RS23025 at 4765.649 kb on - strand, within ABID97_RS23025 at 4765.669 kb on + strand, within ABID97_RS23025 at 4765.822 kb on + strand, within ABID97_RS23025 at 4765.823 kb on - strand, within ABID97_RS23025 at 4765.912 kb on + strand, within ABID97_RS23025 at 4765.913 kb on - strand, within ABID97_RS23025 at 4765.913 kb on - strand, within ABID97_RS23025 at 4765.913 kb on - strand, within ABID97_RS23025 at 4765.913 kb on - strand, within ABID97_RS23025 at 4765.957 kb on + strand, within ABID97_RS23025 at 4765.957 kb on + strand, within ABID97_RS23025 at 4765.958 kb on - strand, within ABID97_RS23025 at 4766.008 kb on + strand, within ABID97_RS23025 at 4766.008 kb on + strand, within ABID97_RS23025 at 4766.008 kb on + strand, within ABID97_RS23025 at 4766.008 kb on + strand, within ABID97_RS23025 at 4766.008 kb on + strand, within ABID97_RS23025 at 4766.008 kb on + strand, within ABID97_RS23025 at 4766.009 kb on - strand, within ABID97_RS23025 at 4766.009 kb on - strand, within ABID97_RS23025 at 4766.009 kb on - strand, within ABID97_RS23025 at 4766.009 kb on - strand, within ABID97_RS23025 at 4766.009 kb on - strand, within ABID97_RS23025 at 4766.009 kb on - strand, within ABID97_RS23025 at 4766.009 kb on - strand, within ABID97_RS23025 at 4766.183 kb on + strand at 4766.183 kb on + strand at 4766.183 kb on + strand at 4766.183 kb on + strand at 4766.184 kb on - strand at 4766.184 kb on - strand at 4766.184 kb on - strand at 4766.184 kb on - strand at 4766.184 kb on - strand at 4766.265 kb on - strand at 4766.525 kb on + strand at 4766.526 kb on - strand at 4766.553 kb on + strand at 4766.564 kb on + strand at 4766.579 kb on + strand at 4766.583 kb on + strand at 4766.583 kb on + strand at 4766.583 kb on + strand at 4766.807 kb on + strand, within ABID97_RS23030 at 4766.807 kb on + strand, within ABID97_RS23030 at 4767.212 kb on + strand, within ABID97_RS23030 at 4767.302 kb on + strand, within ABID97_RS23030 at 4767.303 kb on - strand, within ABID97_RS23030 at 4767.303 kb on - strand, within ABID97_RS23030 at 4767.303 kb on - strand, within ABID97_RS23030 at 4767.548 kb on + strand, within ABID97_RS23030 at 4767.548 kb on + strand, within ABID97_RS23030 at 4767.548 kb on + strand, within ABID97_RS23030 at 4767.548 kb on + strand, within ABID97_RS23030 at 4767.549 kb on - strand, within ABID97_RS23030 at 4767.549 kb on - strand, within ABID97_RS23030 at 4767.549 kb on - strand, within ABID97_RS23030 at 4767.549 kb on - strand, within ABID97_RS23030 at 4767.549 kb on - strand, within ABID97_RS23030 at 4767.549 kb on - strand, within ABID97_RS23030 at 4767.549 kb on - strand, within ABID97_RS23030 at 4767.628 kb on - strand, within ABID97_RS23030 at 4767.828 kb on - strand, within ABID97_RS23030 at 4767.836 kb on + strand, within ABID97_RS23030 at 4767.836 kb on + strand, within ABID97_RS23030 at 4767.836 kb on + strand, within ABID97_RS23030 at 4767.836 kb on + strand, within ABID97_RS23030 at 4767.836 kb on + strand, within ABID97_RS23030 at 4767.836 kb on + strand, within ABID97_RS23030 at 4767.837 kb on - strand, within ABID97_RS23030 at 4767.837 kb on - strand, within ABID97_RS23030 at 4767.947 kb on + strand, within ABID97_RS23030 at 4767.948 kb on - strand, within ABID97_RS23030 at 4767.948 kb on - strand, within ABID97_RS23030 at 4768.235 kb on + strand, within ABID97_RS23030 at 4768.433 kb on + strand, within ABID97_RS23030 at 4768.433 kb on + strand, within ABID97_RS23030 at 4768.433 kb on + strand, within ABID97_RS23030 at 4768.433 kb on + strand, within ABID97_RS23030 at 4768.433 kb on + strand, within ABID97_RS23030 at 4768.433 kb on + strand, within ABID97_RS23030 at 4768.434 kb on - strand, within ABID97_RS23030 at 4768.434 kb on - strand, within ABID97_RS23030 at 4768.434 kb on - strand, within ABID97_RS23030 at 4768.434 kb on - strand, within ABID97_RS23030 at 4768.601 kb on + strand at 4768.601 kb on + strand at 4768.601 kb on + strand at 4768.601 kb on + strand at 4768.602 kb on - strand at 4768.602 kb on - strand at 4768.602 kb on - strand at 4768.625 kb on + strand at 4768.625 kb on + strand at 4768.625 kb on + strand at 4768.625 kb on + strand at 4768.625 kb on + strand at 4768.626 kb on - strand at 4768.626 kb on - strand at 4769.331 kb on + strand at 4769.331 kb on + strand at 4769.331 kb on + strand at 4769.445 kb on + strand, within ABID97_RS23040 at 4769.445 kb on + strand, within ABID97_RS23040 at 4769.446 kb on - strand, within ABID97_RS23040
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 4,765,555 + ABID97_RS23025 0.12 +1.2 4,765,556 - ABID97_RS23025 0.12 +1.1 4,765,585 + ABID97_RS23025 0.16 +0.7 4,765,585 + ABID97_RS23025 0.16 +1.4 4,765,585 + ABID97_RS23025 0.16 +0.5 4,765,586 - ABID97_RS23025 0.16 +1.0 4,765,648 + ABID97_RS23025 0.25 +1.0 4,765,648 + ABID97_RS23025 0.25 +1.7 4,765,648 + ABID97_RS23025 0.25 +1.2 4,765,649 - ABID97_RS23025 0.25 +0.9 4,765,669 + ABID97_RS23025 0.28 +1.0 4,765,822 + ABID97_RS23025 0.49 +1.4 4,765,823 - ABID97_RS23025 0.49 +0.9 4,765,912 + ABID97_RS23025 0.62 +1.1 4,765,913 - ABID97_RS23025 0.62 +0.8 4,765,913 - ABID97_RS23025 0.62 +1.8 4,765,913 - ABID97_RS23025 0.62 +1.0 4,765,913 - ABID97_RS23025 0.62 +0.5 4,765,957 + ABID97_RS23025 0.68 +1.0 4,765,957 + ABID97_RS23025 0.68 +0.9 4,765,958 - ABID97_RS23025 0.68 +0.9 4,766,008 + ABID97_RS23025 0.75 +0.9 4,766,008 + ABID97_RS23025 0.75 +0.9 4,766,008 + ABID97_RS23025 0.75 +1.0 4,766,008 + ABID97_RS23025 0.75 +1.1 4,766,008 + ABID97_RS23025 0.75 +1.4 4,766,008 + ABID97_RS23025 0.75 +0.9 4,766,009 - ABID97_RS23025 0.75 +1.0 4,766,009 - ABID97_RS23025 0.75 +0.6 4,766,009 - ABID97_RS23025 0.75 +1.8 4,766,009 - ABID97_RS23025 0.75 +0.7 4,766,009 - ABID97_RS23025 0.75 -0.5 4,766,009 - ABID97_RS23025 0.75 +1.5 4,766,009 - ABID97_RS23025 0.75 +2.0 4,766,183 + +0.9 4,766,183 + +0.6 4,766,183 + +1.5 4,766,183 + +0.5 4,766,184 - +0.9 4,766,184 - +0.9 4,766,184 - +1.0 4,766,184 - +1.1 4,766,184 - +0.9 4,766,265 - -1.8 4,766,525 + +0.8 4,766,526 - -0.7 4,766,553 + -0.1 4,766,564 + +0.5 4,766,579 + +0.5 4,766,583 + +1.1 4,766,583 + +1.0 4,766,583 + +1.1 4,766,807 + ABID97_RS23030 0.13 +1.7 4,766,807 + ABID97_RS23030 0.13 +1.1 4,767,212 + ABID97_RS23030 0.31 +1.7 4,767,302 + ABID97_RS23030 0.35 +1.1 4,767,303 - ABID97_RS23030 0.35 +1.2 4,767,303 - ABID97_RS23030 0.35 +2.9 4,767,303 - ABID97_RS23030 0.35 +2.6 4,767,548 + ABID97_RS23030 0.45 +1.2 4,767,548 + ABID97_RS23030 0.45 +1.0 4,767,548 + ABID97_RS23030 0.45 +1.2 4,767,548 + ABID97_RS23030 0.45 +2.4 4,767,549 - ABID97_RS23030 0.45 +0.2 4,767,549 - ABID97_RS23030 0.45 +3.0 4,767,549 - ABID97_RS23030 0.45 +1.9 4,767,549 - ABID97_RS23030 0.45 +2.6 4,767,549 - ABID97_RS23030 0.45 +2.8 4,767,549 - ABID97_RS23030 0.45 +2.4 4,767,549 - ABID97_RS23030 0.45 +3.6 4,767,628 - ABID97_RS23030 0.49 +2.9 4,767,828 - ABID97_RS23030 0.58 +2.6 4,767,836 + ABID97_RS23030 0.58 +0.9 4,767,836 + ABID97_RS23030 0.58 +2.5 4,767,836 + ABID97_RS23030 0.58 +0.5 4,767,836 + ABID97_RS23030 0.58 +1.1 4,767,836 + ABID97_RS23030 0.58 +1.6 4,767,836 + ABID97_RS23030 0.58 +1.5 4,767,837 - ABID97_RS23030 0.58 +3.3 4,767,837 - ABID97_RS23030 0.58 +2.0 4,767,947 + ABID97_RS23030 0.63 +1.5 4,767,948 - ABID97_RS23030 0.63 +2.1 4,767,948 - ABID97_RS23030 0.63 +1.8 4,768,235 + ABID97_RS23030 0.76 +1.4 4,768,433 + ABID97_RS23030 0.85 +1.6 4,768,433 + ABID97_RS23030 0.85 +1.8 4,768,433 + ABID97_RS23030 0.85 +1.2 4,768,433 + ABID97_RS23030 0.85 +1.3 4,768,433 + ABID97_RS23030 0.85 +1.7 4,768,433 + ABID97_RS23030 0.85 +1.7 4,768,434 - ABID97_RS23030 0.85 +3.1 4,768,434 - ABID97_RS23030 0.85 +2.3 4,768,434 - ABID97_RS23030 0.85 +3.7 4,768,434 - ABID97_RS23030 0.85 +2.2 4,768,601 + +1.5 4,768,601 + +1.8 4,768,601 + +0.7 4,768,601 + +1.5 4,768,602 - +2.8 4,768,602 - +2.7 4,768,602 - +3.0 4,768,625 + +1.4 4,768,625 + +1.1 4,768,625 + +1.3 4,768,625 + +0.9 4,768,625 + -1.5 4,768,626 - +2.7 4,768,626 - +2.3 4,769,331 + +1.2 4,769,331 + +1.9 4,769,331 + +2.0 4,769,445 + ABID97_RS23040 0.19 +1.7 4,769,445 + ABID97_RS23040 0.19 +1.5 4,769,446 - ABID97_RS23040 0.19 +4.3
Or see this region's nucleotide sequence