Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21810 and ABID97_RS21815 are separated by 3 nucleotides ABID97_RS21815 and ABID97_RS21820 are separated by 1 nucleotides ABID97_RS21820 and ABID97_RS21825 are separated by 468 nucleotides ABID97_RS21825 and ABID97_RS21830 are separated by 30 nucleotides
ABID97_RS21810: ABID97_RS21810 - type II restriction endonuclease, at 4,511,139 to 4,512,527
_RS21810
ABID97_RS21815: ABID97_RS21815 - very short patch repair endonuclease, at 4,512,531 to 4,513,022
_RS21815
ABID97_RS21820: ABID97_RS21820 - DNA (cytosine-5-)-methyltransferase, at 4,513,024 to 4,514,271
_RS21820
ABID97_RS21825: ABID97_RS21825 - helix-turn-helix transcriptional regulator, at 4,514,740 to 4,515,048
_RS21825
ABID97_RS21830: ABID97_RS21830 - bifunctional enoyl-CoA hydratase/phosphate acetyltransferase, at 4,515,079 to 4,516,044
_RS21830
Position (kb) 4513
4514
4515 Strain fitness (log2 ratio) -1
0
1 at 4512.052 kb on + strand, within ABID97_RS21810 at 4512.152 kb on + strand, within ABID97_RS21810 at 4512.153 kb on - strand, within ABID97_RS21810 at 4512.153 kb on - strand, within ABID97_RS21810 at 4512.159 kb on + strand, within ABID97_RS21810 at 4512.160 kb on - strand, within ABID97_RS21810 at 4512.160 kb on - strand, within ABID97_RS21810 at 4512.173 kb on + strand, within ABID97_RS21810 at 4512.185 kb on + strand, within ABID97_RS21810 at 4512.185 kb on + strand, within ABID97_RS21810 at 4512.186 kb on - strand, within ABID97_RS21810 at 4512.186 kb on - strand, within ABID97_RS21810 at 4512.186 kb on - strand, within ABID97_RS21810 at 4512.186 kb on - strand, within ABID97_RS21810 at 4512.214 kb on + strand, within ABID97_RS21810 at 4512.215 kb on - strand, within ABID97_RS21810 at 4512.215 kb on - strand, within ABID97_RS21810 at 4512.273 kb on + strand, within ABID97_RS21810 at 4512.274 kb on - strand, within ABID97_RS21810 at 4512.361 kb on + strand, within ABID97_RS21810 at 4512.361 kb on + strand, within ABID97_RS21810 at 4512.430 kb on + strand at 4512.532 kb on + strand at 4512.533 kb on - strand at 4512.714 kb on + strand, within ABID97_RS21815 at 4512.714 kb on + strand, within ABID97_RS21815 at 4512.715 kb on - strand, within ABID97_RS21815 at 4512.938 kb on + strand, within ABID97_RS21815 at 4512.939 kb on - strand, within ABID97_RS21815 at 4513.016 kb on + strand at 4514.276 kb on - strand at 4514.364 kb on - strand at 4514.556 kb on - strand at 4514.593 kb on + strand at 4514.594 kb on - strand at 4514.866 kb on + strand, within ABID97_RS21825 at 4514.867 kb on - strand, within ABID97_RS21825 at 4514.941 kb on + strand, within ABID97_RS21825 at 4514.941 kb on + strand, within ABID97_RS21825 at 4514.942 kb on - strand, within ABID97_RS21825 at 4514.942 kb on - strand, within ABID97_RS21825 at 4514.942 kb on - strand, within ABID97_RS21825 at 4514.947 kb on + strand, within ABID97_RS21825 at 4514.989 kb on + strand, within ABID97_RS21825 at 4514.989 kb on + strand, within ABID97_RS21825 at 4514.989 kb on + strand, within ABID97_RS21825 at 4514.989 kb on + strand, within ABID97_RS21825 at 4514.989 kb on + strand, within ABID97_RS21825 at 4515.051 kb on + strand at 4515.051 kb on + strand at 4515.052 kb on - strand at 4515.052 kb on - strand at 4515.124 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 4,512,052 + ABID97_RS21810 0.66 +0.3 4,512,152 + ABID97_RS21810 0.73 +0.2 4,512,153 - ABID97_RS21810 0.73 -0.4 4,512,153 - ABID97_RS21810 0.73 +0.0 4,512,159 + ABID97_RS21810 0.73 -0.7 4,512,160 - ABID97_RS21810 0.74 -0.9 4,512,160 - ABID97_RS21810 0.74 +0.7 4,512,173 + ABID97_RS21810 0.74 -0.9 4,512,185 + ABID97_RS21810 0.75 -0.1 4,512,185 + ABID97_RS21810 0.75 -0.0 4,512,186 - ABID97_RS21810 0.75 +0.7 4,512,186 - ABID97_RS21810 0.75 -0.3 4,512,186 - ABID97_RS21810 0.75 -0.6 4,512,186 - ABID97_RS21810 0.75 +0.4 4,512,214 + ABID97_RS21810 0.77 +0.2 4,512,215 - ABID97_RS21810 0.77 +0.3 4,512,215 - ABID97_RS21810 0.77 -1.2 4,512,273 + ABID97_RS21810 0.82 -0.3 4,512,274 - ABID97_RS21810 0.82 -0.0 4,512,361 + ABID97_RS21810 0.88 +0.1 4,512,361 + ABID97_RS21810 0.88 +1.6 4,512,430 + +0.5 4,512,532 + -0.2 4,512,533 - +0.3 4,512,714 + ABID97_RS21815 0.37 -1.3 4,512,714 + ABID97_RS21815 0.37 -0.3 4,512,715 - ABID97_RS21815 0.37 -0.4 4,512,938 + ABID97_RS21815 0.83 -0.0 4,512,939 - ABID97_RS21815 0.83 -0.1 4,513,016 + +0.5 4,514,276 - +0.6 4,514,364 - +1.4 4,514,556 - -0.3 4,514,593 + -1.0 4,514,594 - +0.4 4,514,866 + ABID97_RS21825 0.41 -0.9 4,514,867 - ABID97_RS21825 0.41 +0.5 4,514,941 + ABID97_RS21825 0.65 -0.0 4,514,941 + ABID97_RS21825 0.65 -0.7 4,514,942 - ABID97_RS21825 0.65 -0.3 4,514,942 - ABID97_RS21825 0.65 -0.9 4,514,942 - ABID97_RS21825 0.65 -0.2 4,514,947 + ABID97_RS21825 0.67 -0.4 4,514,989 + ABID97_RS21825 0.81 -0.8 4,514,989 + ABID97_RS21825 0.81 +0.3 4,514,989 + ABID97_RS21825 0.81 -0.6 4,514,989 + ABID97_RS21825 0.81 -0.2 4,514,989 + ABID97_RS21825 0.81 -0.1 4,515,051 + -0.4 4,515,051 + -1.4 4,515,052 - -0.4 4,515,052 - +0.6 4,515,124 + +0.1
Or see this region's nucleotide sequence