Strain Fitness in Variovorax sp. OAS795 around ABID97_RS20125

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS20110 and ABID97_RS20115 are separated by 22 nucleotidesABID97_RS20115 and ABID97_RS20120 overlap by 1 nucleotidesABID97_RS20120 and ABID97_RS20125 are separated by 79 nucleotidesABID97_RS20125 and ABID97_RS20130 are separated by 147 nucleotides ABID97_RS20110: ABID97_RS20110 - MFS transporter, at 4,157,682 to 4,158,905 _RS20110 ABID97_RS20115: ABID97_RS20115 - hypothetical protein, at 4,158,928 to 4,159,068 _RS20115 ABID97_RS20120: ABID97_RS20120 - class I SAM-dependent methyltransferase, at 4,159,068 to 4,159,643 _RS20120 ABID97_RS20125: ABID97_RS20125 - 4-hydroxy-tetrahydrodipicolinate synthase, at 4,159,723 to 4,160,613 _RS20125 ABID97_RS20130: ABID97_RS20130 - outer membrane protein assembly factor BamC, at 4,160,761 to 4,161,849 _RS20130 Position (kb) 4159 4160 4161Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4158.765 kb on + strand, within ABID97_RS20110at 4158.771 kb on + strand, within ABID97_RS20110at 4158.771 kb on + strand, within ABID97_RS20110at 4158.772 kb on - strand, within ABID97_RS20110at 4158.789 kb on + strandat 4158.789 kb on + strandat 4159.012 kb on + strand, within ABID97_RS20115at 4159.013 kb on - strand, within ABID97_RS20115at 4159.013 kb on - strand, within ABID97_RS20115at 4159.013 kb on - strand, within ABID97_RS20115at 4159.356 kb on + strand, within ABID97_RS20120at 4159.356 kb on + strand, within ABID97_RS20120at 4159.357 kb on - strand, within ABID97_RS20120at 4159.357 kb on - strand, within ABID97_RS20120at 4159.357 kb on - strand, within ABID97_RS20120at 4159.357 kb on - strand, within ABID97_RS20120at 4159.357 kb on - strand, within ABID97_RS20120at 4159.530 kb on + strand, within ABID97_RS20120at 4159.567 kb on + strand, within ABID97_RS20120at 4159.683 kb on + strandat 4159.684 kb on - strandat 4160.044 kb on + strand, within ABID97_RS20125at 4160.045 kb on - strand, within ABID97_RS20125at 4160.047 kb on + strand, within ABID97_RS20125at 4160.047 kb on + strand, within ABID97_RS20125at 4160.048 kb on - strand, within ABID97_RS20125at 4160.048 kb on - strand, within ABID97_RS20125at 4160.075 kb on - strand, within ABID97_RS20125at 4160.128 kb on + strand, within ABID97_RS20125at 4160.128 kb on + strand, within ABID97_RS20125at 4160.128 kb on + strand, within ABID97_RS20125at 4160.128 kb on + strand, within ABID97_RS20125at 4160.129 kb on - strand, within ABID97_RS20125at 4160.158 kb on - strand, within ABID97_RS20125at 4160.281 kb on + strand, within ABID97_RS20125at 4160.282 kb on - strand, within ABID97_RS20125at 4160.725 kb on - strandat 4160.854 kb on + strandat 4160.926 kb on + strand, within ABID97_RS20130at 4160.963 kb on - strand, within ABID97_RS20130at 4160.963 kb on - strand, within ABID97_RS20130at 4161.337 kb on + strand, within ABID97_RS20130at 4161.337 kb on + strand, within ABID97_RS20130at 4161.338 kb on - strand, within ABID97_RS20130

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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4,158,765 + ABID97_RS20110 0.88 +0.4
4,158,771 + ABID97_RS20110 0.89 +0.0
4,158,771 + ABID97_RS20110 0.89 -0.2
4,158,772 - ABID97_RS20110 0.89 -0.3
4,158,789 + +0.1
4,158,789 + -0.3
4,159,012 + ABID97_RS20115 0.60 +0.4
4,159,013 - ABID97_RS20115 0.60 -0.1
4,159,013 - ABID97_RS20115 0.60 +0.4
4,159,013 - ABID97_RS20115 0.60 +0.0
4,159,356 + ABID97_RS20120 0.50 -0.4
4,159,356 + ABID97_RS20120 0.50 +0.7
4,159,357 - ABID97_RS20120 0.50 -0.1
4,159,357 - ABID97_RS20120 0.50 -0.2
4,159,357 - ABID97_RS20120 0.50 -0.3
4,159,357 - ABID97_RS20120 0.50 +0.3
4,159,357 - ABID97_RS20120 0.50 -1.6
4,159,530 + ABID97_RS20120 0.80 -1.0
4,159,567 + ABID97_RS20120 0.87 +0.0
4,159,683 + -0.8
4,159,684 - -1.8
4,160,044 + ABID97_RS20125 0.36 +3.4
4,160,045 - ABID97_RS20125 0.36 +4.0
4,160,047 + ABID97_RS20125 0.36 +3.7
4,160,047 + ABID97_RS20125 0.36 +3.5
4,160,048 - ABID97_RS20125 0.36 +3.1
4,160,048 - ABID97_RS20125 0.36 +4.2
4,160,075 - ABID97_RS20125 0.40 +3.6
4,160,128 + ABID97_RS20125 0.45 +3.5
4,160,128 + ABID97_RS20125 0.45 +2.7
4,160,128 + ABID97_RS20125 0.45 +3.5
4,160,128 + ABID97_RS20125 0.45 +3.5
4,160,129 - ABID97_RS20125 0.46 +3.5
4,160,158 - ABID97_RS20125 0.49 +3.8
4,160,281 + ABID97_RS20125 0.63 +3.5
4,160,282 - ABID97_RS20125 0.63 +3.5
4,160,725 - +1.3
4,160,854 + +1.6
4,160,926 + ABID97_RS20130 0.15 +0.7
4,160,963 - ABID97_RS20130 0.19 +1.0
4,160,963 - ABID97_RS20130 0.19 +0.2
4,161,337 + ABID97_RS20130 0.53 +1.6
4,161,337 + ABID97_RS20130 0.53 +1.0
4,161,338 - ABID97_RS20130 0.53 +1.6

Or see this region's nucleotide sequence