Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16970

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16960 and ABID97_RS16965 overlap by 20 nucleotidesABID97_RS16965 and ABID97_RS16970 overlap by 4 nucleotidesABID97_RS16970 and ABID97_RS16975 are separated by 134 nucleotidesABID97_RS16975 and ABID97_RS16980 are separated by 12 nucleotides ABID97_RS16960: ABID97_RS16960 - tetraacyldisaccharide 4'-kinase, at 3,506,451 to 3,507,434 _RS16960 ABID97_RS16965: ABID97_RS16965 - Trm112 family protein, at 3,507,415 to 3,507,597 _RS16965 ABID97_RS16970: ABID97_RS16970 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 3,507,594 to 3,508,367 _RS16970 ABID97_RS16975: ABID97_RS16975 - adenylate kinase, at 3,508,502 to 3,509,158 _RS16975 ABID97_RS16980: ABID97_RS16980 - asparaginase, at 3,509,171 to 3,510,166 _RS16980 Position (kb) 3507 3508 3509Strain fitness (log2 ratio) -1 0 1at 3507.403 kb on + strandat 3507.403 kb on + strandat 3507.404 kb on - strandat 3508.419 kb on + strandat 3508.481 kb on + strandat 3508.481 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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3,507,403 + -0.0
3,507,403 + -0.2
3,507,404 - +0.4
3,508,419 + +0.8
3,508,481 + +0.2
3,508,481 + -0.9

Or see this region's nucleotide sequence