Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15240

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15225 and ABID97_RS15230 are separated by 4 nucleotidesABID97_RS15230 and ABID97_RS15235 overlap by 1 nucleotidesABID97_RS15235 and ABID97_RS15240 are separated by 111 nucleotidesABID97_RS15240 and ABID97_RS15245 are separated by 5 nucleotides ABID97_RS15225: ABID97_RS15225 - hypothetical protein, at 3,151,605 to 3,152,018 _RS15225 ABID97_RS15230: ABID97_RS15230 - tail protein X, at 3,152,023 to 3,152,226 _RS15230 ABID97_RS15235: ABID97_RS15235 - head completion/stabilization protein, at 3,152,226 to 3,152,696 _RS15235 ABID97_RS15240: ABID97_RS15240 - phage terminase small subunit, at 3,152,808 to 3,153,515 _RS15240 ABID97_RS15245: ABID97_RS15245 - phage major capsid protein, P2 family, at 3,153,521 to 3,154,528 _RS15245 Position (kb) 3152 3153 3154Strain fitness (log2 ratio) -1 0 1at 3152.055 kb on + strand, within ABID97_RS15230at 3152.721 kb on + strandat 3152.950 kb on + strand, within ABID97_RS15240at 3153.194 kb on - strand, within ABID97_RS15240at 3153.317 kb on - strand, within ABID97_RS15240at 3153.419 kb on - strand, within ABID97_RS15240at 3153.600 kb on + strandat 3153.601 kb on - strandat 3153.717 kb on + strand, within ABID97_RS15245at 3153.718 kb on - strand, within ABID97_RS15245at 3153.904 kb on - strand, within ABID97_RS15245at 3153.904 kb on - strand, within ABID97_RS15245at 3153.937 kb on - strand, within ABID97_RS15245at 3154.216 kb on - strand, within ABID97_RS15245at 3154.216 kb on - strand, within ABID97_RS15245at 3154.216 kb on - strand, within ABID97_RS15245

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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3,152,055 + ABID97_RS15230 0.16 -0.4
3,152,721 + -0.0
3,152,950 + ABID97_RS15240 0.20 -1.1
3,153,194 - ABID97_RS15240 0.55 -0.2
3,153,317 - ABID97_RS15240 0.72 -0.3
3,153,419 - ABID97_RS15240 0.86 -0.6
3,153,600 + -0.0
3,153,601 - +0.1
3,153,717 + ABID97_RS15245 0.19 +0.5
3,153,718 - ABID97_RS15245 0.20 +0.0
3,153,904 - ABID97_RS15245 0.38 +0.7
3,153,904 - ABID97_RS15245 0.38 +0.0
3,153,937 - ABID97_RS15245 0.41 -1.3
3,154,216 - ABID97_RS15245 0.69 -0.1
3,154,216 - ABID97_RS15245 0.69 -0.0
3,154,216 - ABID97_RS15245 0.69 -0.5

Or see this region's nucleotide sequence