Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS06080 and ABID97_RS06090 are separated by 489 nucleotides ABID97_RS06090 and ABID97_RS06095 overlap by 4 nucleotides
ABID97_RS06080: ABID97_RS06080 - cysteine synthase A, at 1,285,429 to 1,286,349
_RS06080
ABID97_RS06090: ABID97_RS06090 - RNA pseudouridine synthase, at 1,286,839 to 1,287,549
_RS06090
ABID97_RS06095: ABID97_RS06095 - MBL fold metallo-hydrolase, at 1,287,546 to 1,289,222
_RS06095
Position (kb) 1286
1287
1288 Strain fitness (log2 ratio) -2
-1
0
1 at 1286.090 kb on + strand, within ABID97_RS06080 at 1286.090 kb on + strand, within ABID97_RS06080 at 1286.090 kb on + strand, within ABID97_RS06080 at 1286.091 kb on - strand, within ABID97_RS06080 at 1286.370 kb on - strand at 1286.860 kb on + strand at 1286.860 kb on + strand at 1286.860 kb on + strand at 1286.860 kb on + strand at 1286.865 kb on - strand at 1286.865 kb on - strand at 1286.865 kb on - strand at 1287.170 kb on + strand, within ABID97_RS06090 at 1287.170 kb on + strand, within ABID97_RS06090 at 1287.170 kb on + strand, within ABID97_RS06090 at 1287.170 kb on + strand, within ABID97_RS06090 at 1287.171 kb on - strand, within ABID97_RS06090 at 1287.171 kb on - strand, within ABID97_RS06090 at 1287.462 kb on + strand, within ABID97_RS06090 at 1287.637 kb on + strand at 1287.637 kb on + strand at 1287.638 kb on - strand at 1287.766 kb on + strand, within ABID97_RS06095 at 1287.766 kb on + strand, within ABID97_RS06095 at 1287.766 kb on + strand, within ABID97_RS06095 at 1287.766 kb on + strand, within ABID97_RS06095 at 1287.767 kb on - strand, within ABID97_RS06095 at 1287.767 kb on - strand, within ABID97_RS06095 at 1287.767 kb on - strand, within ABID97_RS06095 at 1287.874 kb on - strand, within ABID97_RS06095 at 1288.274 kb on - strand, within ABID97_RS06095 at 1288.274 kb on - strand, within ABID97_RS06095 at 1288.300 kb on + strand, within ABID97_RS06095 at 1288.300 kb on + strand, within ABID97_RS06095 at 1288.300 kb on + strand, within ABID97_RS06095 at 1288.300 kb on + strand, within ABID97_RS06095 at 1288.300 kb on + strand, within ABID97_RS06095 at 1288.301 kb on - strand, within ABID97_RS06095 at 1288.301 kb on - strand, within ABID97_RS06095 at 1288.301 kb on - strand, within ABID97_RS06095 at 1288.301 kb on - strand, within ABID97_RS06095 at 1288.301 kb on - strand, within ABID97_RS06095 at 1288.301 kb on - strand, within ABID97_RS06095 at 1288.301 kb on - strand, within ABID97_RS06095 at 1288.301 kb on - strand, within ABID97_RS06095 at 1288.301 kb on - strand, within ABID97_RS06095 at 1288.301 kb on - strand, within ABID97_RS06095 at 1288.301 kb on - strand, within ABID97_RS06095 at 1288.448 kb on - strand, within ABID97_RS06095 at 1288.469 kb on - strand, within ABID97_RS06095
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 1,286,090 + ABID97_RS06080 0.72 -0.3 1,286,090 + ABID97_RS06080 0.72 +0.1 1,286,090 + ABID97_RS06080 0.72 +1.0 1,286,091 - ABID97_RS06080 0.72 +0.3 1,286,370 - -0.5 1,286,860 + +0.0 1,286,860 + +0.4 1,286,860 + +0.0 1,286,860 + -0.4 1,286,865 - -0.4 1,286,865 - +0.3 1,286,865 - +0.3 1,287,170 + ABID97_RS06090 0.47 +0.5 1,287,170 + ABID97_RS06090 0.47 +0.2 1,287,170 + ABID97_RS06090 0.47 +0.1 1,287,170 + ABID97_RS06090 0.47 -0.1 1,287,171 - ABID97_RS06090 0.47 +0.1 1,287,171 - ABID97_RS06090 0.47 +0.4 1,287,462 + ABID97_RS06090 0.88 +0.9 1,287,637 + -1.8 1,287,637 + -1.5 1,287,638 - -0.6 1,287,766 + ABID97_RS06095 0.13 -0.5 1,287,766 + ABID97_RS06095 0.13 +0.1 1,287,766 + ABID97_RS06095 0.13 -0.1 1,287,766 + ABID97_RS06095 0.13 -1.4 1,287,767 - ABID97_RS06095 0.13 -1.0 1,287,767 - ABID97_RS06095 0.13 -1.0 1,287,767 - ABID97_RS06095 0.13 -1.3 1,287,874 - ABID97_RS06095 0.20 -0.8 1,288,274 - ABID97_RS06095 0.43 -2.4 1,288,274 - ABID97_RS06095 0.43 +0.6 1,288,300 + ABID97_RS06095 0.45 +0.2 1,288,300 + ABID97_RS06095 0.45 -1.1 1,288,300 + ABID97_RS06095 0.45 -1.1 1,288,300 + ABID97_RS06095 0.45 -2.2 1,288,300 + ABID97_RS06095 0.45 +0.7 1,288,301 - ABID97_RS06095 0.45 -1.0 1,288,301 - ABID97_RS06095 0.45 -0.6 1,288,301 - ABID97_RS06095 0.45 -1.6 1,288,301 - ABID97_RS06095 0.45 -0.8 1,288,301 - ABID97_RS06095 0.45 -1.3 1,288,301 - ABID97_RS06095 0.45 -1.0 1,288,301 - ABID97_RS06095 0.45 -0.9 1,288,301 - ABID97_RS06095 0.45 -1.0 1,288,301 - ABID97_RS06095 0.45 -0.6 1,288,301 - ABID97_RS06095 0.45 -1.2 1,288,301 - ABID97_RS06095 0.45 -1.1 1,288,448 - ABID97_RS06095 0.54 -1.1 1,288,469 - ABID97_RS06095 0.55 +1.2
Or see this region's nucleotide sequence