Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS05595 and ABID97_RS05600 are separated by 10 nucleotides ABID97_RS05600 and ABID97_RS05605 are separated by 5 nucleotides ABID97_RS05605 and ABID97_RS05610 are separated by 4 nucleotides ABID97_RS05610 and ABID97_RS05615 are separated by 22 nucleotides
ABID97_RS05595: ABID97_RS05595 - VOC family protein, at 1,176,995 to 1,177,687
_RS05595
ABID97_RS05600: ABID97_RS05600 - PhzF family phenazine biosynthesis protein, at 1,177,698 to 1,178,624
_RS05600
ABID97_RS05605: ABID97_RS05605 - glutathione S-transferase, at 1,178,630 to 1,179,271
_RS05605
ABID97_RS05610: ABID97_RS05610 - LysE family translocator, at 1,179,276 to 1,179,947
_RS05610
ABID97_RS05615: ABID97_RS05615 - DJ-1/PfpI family protein, at 1,179,970 to 1,180,596
_RS05615
Position (kb) 1178
1179
1180 Strain fitness (log2 ratio) -1
0
1 at 1177.699 kb on + strand at 1177.823 kb on - strand, within ABID97_RS05600 at 1178.576 kb on - strand at 1178.689 kb on - strand at 1178.725 kb on - strand, within ABID97_RS05605 at 1178.808 kb on + strand, within ABID97_RS05605 at 1178.808 kb on + strand, within ABID97_RS05605 at 1178.808 kb on + strand, within ABID97_RS05605 at 1178.808 kb on + strand, within ABID97_RS05605 at 1178.808 kb on + strand, within ABID97_RS05605 at 1178.809 kb on - strand, within ABID97_RS05605 at 1178.809 kb on - strand, within ABID97_RS05605 at 1178.809 kb on - strand, within ABID97_RS05605 at 1178.809 kb on - strand, within ABID97_RS05605 at 1179.046 kb on - strand, within ABID97_RS05605 at 1179.700 kb on + strand, within ABID97_RS05610 at 1179.701 kb on - strand, within ABID97_RS05610 at 1180.004 kb on + strand at 1180.037 kb on + strand, within ABID97_RS05615 at 1180.037 kb on + strand, within ABID97_RS05615 at 1180.067 kb on + strand, within ABID97_RS05615 at 1180.067 kb on + strand, within ABID97_RS05615 at 1180.067 kb on + strand, within ABID97_RS05615 at 1180.067 kb on + strand, within ABID97_RS05615 at 1180.068 kb on - strand, within ABID97_RS05615 at 1180.068 kb on - strand, within ABID97_RS05615 at 1180.068 kb on - strand, within ABID97_RS05615 at 1180.068 kb on - strand, within ABID97_RS05615 at 1180.131 kb on - strand, within ABID97_RS05615 at 1180.163 kb on - strand, within ABID97_RS05615 at 1180.163 kb on - strand, within ABID97_RS05615
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 1,177,699 + +0.2 1,177,823 - ABID97_RS05600 0.13 -0.2 1,178,576 - -0.7 1,178,689 - +0.0 1,178,725 - ABID97_RS05605 0.15 -0.0 1,178,808 + ABID97_RS05605 0.28 -0.6 1,178,808 + ABID97_RS05605 0.28 -0.4 1,178,808 + ABID97_RS05605 0.28 -0.3 1,178,808 + ABID97_RS05605 0.28 +0.0 1,178,808 + ABID97_RS05605 0.28 -0.7 1,178,809 - ABID97_RS05605 0.28 +1.3 1,178,809 - ABID97_RS05605 0.28 -1.5 1,178,809 - ABID97_RS05605 0.28 +0.1 1,178,809 - ABID97_RS05605 0.28 -1.0 1,179,046 - ABID97_RS05605 0.65 -0.8 1,179,700 + ABID97_RS05610 0.63 +0.3 1,179,701 - ABID97_RS05610 0.63 +1.5 1,180,004 + -1.3 1,180,037 + ABID97_RS05615 0.11 +0.1 1,180,037 + ABID97_RS05615 0.11 -0.7 1,180,067 + ABID97_RS05615 0.15 +0.6 1,180,067 + ABID97_RS05615 0.15 -0.2 1,180,067 + ABID97_RS05615 0.15 -0.3 1,180,067 + ABID97_RS05615 0.15 +0.0 1,180,068 - ABID97_RS05615 0.16 -0.8 1,180,068 - ABID97_RS05615 0.16 -0.9 1,180,068 - ABID97_RS05615 0.16 +0.6 1,180,068 - ABID97_RS05615 0.16 -0.5 1,180,131 - ABID97_RS05615 0.26 -0.8 1,180,163 - ABID97_RS05615 0.31 +0.5 1,180,163 - ABID97_RS05615 0.31 -0.5
Or see this region's nucleotide sequence