Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04445 and ABID97_RS04450 are separated by 50 nucleotides ABID97_RS04450 and ABID97_RS04455 are separated by 2 nucleotides ABID97_RS04455 and ABID97_RS04460 overlap by 4 nucleotides
ABID97_RS04445: ABID97_RS04445 - long-chain-fatty-acid--CoA ligase, at 919,983 to 921,662
_RS04445
ABID97_RS04450: ABID97_RS04450 - ABC transporter permease subunit, at 921,713 to 922,717
_RS04450
ABID97_RS04455: ABID97_RS04455 - ABC transporter permease subunit, at 922,720 to 923,625
_RS04455
ABID97_RS04460: ABID97_RS04460 - ABC transporter ATP-binding protein, at 923,622 to 924,653
_RS04460
Position (kb) 921
922
923 Strain fitness (log2 ratio) -1
0
1
2 at 920.772 kb on + strand, within ABID97_RS04445 at 920.772 kb on + strand, within ABID97_RS04445 at 921.120 kb on + strand, within ABID97_RS04445 at 921.120 kb on + strand, within ABID97_RS04445 at 921.121 kb on - strand, within ABID97_RS04445 at 921.121 kb on - strand, within ABID97_RS04445 at 921.121 kb on - strand, within ABID97_RS04445 at 921.294 kb on + strand, within ABID97_RS04445 at 921.294 kb on + strand, within ABID97_RS04445 at 921.337 kb on - strand, within ABID97_RS04445 at 921.393 kb on + strand, within ABID97_RS04445 at 921.543 kb on + strand at 921.543 kb on + strand at 921.544 kb on - strand at 921.660 kb on + strand at 921.660 kb on + strand at 921.660 kb on + strand at 921.701 kb on + strand at 921.702 kb on - strand at 921.909 kb on - strand, within ABID97_RS04450 at 921.917 kb on + strand, within ABID97_RS04450 at 921.917 kb on + strand, within ABID97_RS04450 at 921.918 kb on - strand, within ABID97_RS04450 at 922.229 kb on + strand, within ABID97_RS04450 at 922.409 kb on + strand, within ABID97_RS04450 at 922.410 kb on - strand, within ABID97_RS04450 at 922.410 kb on - strand, within ABID97_RS04450 at 922.410 kb on - strand, within ABID97_RS04450 at 922.410 kb on - strand, within ABID97_RS04450 at 922.410 kb on - strand, within ABID97_RS04450 at 922.410 kb on - strand, within ABID97_RS04450 at 922.685 kb on + strand at 922.685 kb on + strand at 922.685 kb on + strand at 922.686 kb on - strand at 923.248 kb on + strand, within ABID97_RS04455 at 923.248 kb on + strand, within ABID97_RS04455 at 923.249 kb on - strand, within ABID97_RS04455 at 923.296 kb on + strand, within ABID97_RS04455 at 923.297 kb on - strand, within ABID97_RS04455
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 920,772 + ABID97_RS04445 0.47 +0.2 920,772 + ABID97_RS04445 0.47 -0.1 921,120 + ABID97_RS04445 0.68 +0.1 921,120 + ABID97_RS04445 0.68 -0.9 921,121 - ABID97_RS04445 0.68 +0.1 921,121 - ABID97_RS04445 0.68 -0.2 921,121 - ABID97_RS04445 0.68 -0.4 921,294 + ABID97_RS04445 0.78 +1.1 921,294 + ABID97_RS04445 0.78 -0.3 921,337 - ABID97_RS04445 0.81 -0.3 921,393 + ABID97_RS04445 0.84 -0.1 921,543 + -0.0 921,543 + -0.4 921,544 - +0.0 921,660 + +0.1 921,660 + +0.1 921,660 + +1.7 921,701 + -0.6 921,702 - +0.7 921,909 - ABID97_RS04450 0.20 +0.2 921,917 + ABID97_RS04450 0.20 -0.1 921,917 + ABID97_RS04450 0.20 +0.3 921,918 - ABID97_RS04450 0.20 -0.0 922,229 + ABID97_RS04450 0.51 +0.2 922,409 + ABID97_RS04450 0.69 -0.3 922,410 - ABID97_RS04450 0.69 +2.7 922,410 - ABID97_RS04450 0.69 -0.2 922,410 - ABID97_RS04450 0.69 +1.0 922,410 - ABID97_RS04450 0.69 -0.3 922,410 - ABID97_RS04450 0.69 -0.4 922,410 - ABID97_RS04450 0.69 -0.4 922,685 + -0.1 922,685 + -0.5 922,685 + -0.3 922,686 - +0.6 923,248 + ABID97_RS04455 0.58 -0.5 923,248 + ABID97_RS04455 0.58 +0.7 923,249 - ABID97_RS04455 0.58 -0.1 923,296 + ABID97_RS04455 0.64 -0.5 923,297 - ABID97_RS04455 0.64 +0.1
Or see this region's nucleotide sequence