Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04340

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04335 and ABID97_RS04340 are separated by 61 nucleotidesABID97_RS04340 and ABID97_RS04345 are separated by 18 nucleotides ABID97_RS04335: ABID97_RS04335 - sterol desaturase family protein, at 889,540 to 889,995 _RS04335 ABID97_RS04340: ABID97_RS04340 - excinuclease ABC subunit UvrA, at 890,057 to 893,173 _RS04340 ABID97_RS04345: ABID97_RS04345 - chloride channel protein, at 893,192 to 894,574 _RS04345 Position (kb) 890 891 892 893 894Strain fitness (log2 ratio) -2 -1 0 1at 889.264 kb on + strandat 889.265 kb on - strandat 889.291 kb on + strandat 889.291 kb on + strandat 889.292 kb on - strandat 889.292 kb on - strandat 889.436 kb on + strandat 889.436 kb on + strandat 889.436 kb on + strandat 889.592 kb on + strand, within ABID97_RS04335at 889.592 kb on + strand, within ABID97_RS04335at 889.593 kb on - strand, within ABID97_RS04335at 889.593 kb on - strand, within ABID97_RS04335at 889.593 kb on - strand, within ABID97_RS04335at 889.627 kb on + strand, within ABID97_RS04335at 889.627 kb on + strand, within ABID97_RS04335at 889.628 kb on - strand, within ABID97_RS04335at 889.628 kb on - strand, within ABID97_RS04335at 889.688 kb on + strand, within ABID97_RS04335at 889.688 kb on + strand, within ABID97_RS04335at 889.688 kb on + strand, within ABID97_RS04335at 889.689 kb on - strand, within ABID97_RS04335at 889.702 kb on + strand, within ABID97_RS04335at 889.703 kb on - strand, within ABID97_RS04335at 889.723 kb on + strand, within ABID97_RS04335at 889.723 kb on + strand, within ABID97_RS04335at 889.724 kb on - strand, within ABID97_RS04335at 889.724 kb on - strand, within ABID97_RS04335at 889.724 kb on - strand, within ABID97_RS04335at 889.738 kb on + strand, within ABID97_RS04335at 889.787 kb on - strand, within ABID97_RS04335at 889.787 kb on - strand, within ABID97_RS04335at 889.816 kb on + strand, within ABID97_RS04335at 889.817 kb on - strand, within ABID97_RS04335at 889.862 kb on - strand, within ABID97_RS04335at 889.958 kb on + strandat 889.959 kb on - strandat 890.319 kb on + strandat 890.319 kb on + strandat 890.319 kb on + strandat 890.319 kb on + strandat 890.319 kb on + strandat 890.320 kb on - strandat 890.421 kb on + strand, within ABID97_RS04340at 890.421 kb on + strand, within ABID97_RS04340at 890.541 kb on + strand, within ABID97_RS04340at 890.541 kb on + strand, within ABID97_RS04340at 890.542 kb on - strand, within ABID97_RS04340at 890.542 kb on - strand, within ABID97_RS04340at 890.542 kb on - strand, within ABID97_RS04340at 890.542 kb on - strand, within ABID97_RS04340at 890.568 kb on + strand, within ABID97_RS04340at 890.569 kb on - strand, within ABID97_RS04340at 890.569 kb on - strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.601 kb on + strand, within ABID97_RS04340at 890.602 kb on - strand, within ABID97_RS04340at 890.602 kb on - strand, within ABID97_RS04340at 890.602 kb on - strand, within ABID97_RS04340at 890.602 kb on - strand, within ABID97_RS04340at 890.769 kb on + strand, within ABID97_RS04340at 890.769 kb on + strand, within ABID97_RS04340at 890.770 kb on - strand, within ABID97_RS04340at 890.770 kb on - strand, within ABID97_RS04340at 890.770 kb on - strand, within ABID97_RS04340at 890.889 kb on + strand, within ABID97_RS04340at 890.913 kb on + strand, within ABID97_RS04340at 891.219 kb on + strand, within ABID97_RS04340at 891.219 kb on + strand, within ABID97_RS04340at 891.261 kb on + strand, within ABID97_RS04340at 891.261 kb on + strand, within ABID97_RS04340at 891.261 kb on + strand, within ABID97_RS04340at 891.262 kb on - strand, within ABID97_RS04340at 891.262 kb on - strand, within ABID97_RS04340at 891.262 kb on - strand, within ABID97_RS04340at 891.262 kb on - strand, within ABID97_RS04340at 891.262 kb on - strand, within ABID97_RS04340at 891.462 kb on + strand, within ABID97_RS04340at 891.462 kb on + strand, within ABID97_RS04340at 891.462 kb on + strand, within ABID97_RS04340at 891.462 kb on + strand, within ABID97_RS04340at 891.462 kb on + strand, within ABID97_RS04340at 891.463 kb on - strand, within ABID97_RS04340at 891.463 kb on - strand, within ABID97_RS04340at 891.463 kb on - strand, within ABID97_RS04340at 891.463 kb on - strand, within ABID97_RS04340at 891.463 kb on - strand, within ABID97_RS04340at 891.463 kb on - strand, within ABID97_RS04340at 891.561 kb on + strand, within ABID97_RS04340at 891.562 kb on - strand, within ABID97_RS04340at 891.562 kb on - strand, within ABID97_RS04340at 891.562 kb on - strand, within ABID97_RS04340at 891.562 kb on - strand, within ABID97_RS04340at 891.963 kb on + strand, within ABID97_RS04340at 891.963 kb on + strand, within ABID97_RS04340at 891.963 kb on + strand, within ABID97_RS04340at 891.964 kb on - strand, within ABID97_RS04340at 891.964 kb on - strand, within ABID97_RS04340at 891.964 kb on - strand, within ABID97_RS04340at 891.964 kb on - strand, within ABID97_RS04340at 891.964 kb on - strand, within ABID97_RS04340at 892.059 kb on + strand, within ABID97_RS04340at 892.060 kb on - strand, within ABID97_RS04340at 892.060 kb on - strand, within ABID97_RS04340at 892.092 kb on + strand, within ABID97_RS04340at 892.092 kb on + strand, within ABID97_RS04340at 892.093 kb on - strand, within ABID97_RS04340at 892.095 kb on + strand, within ABID97_RS04340at 892.096 kb on - strand, within ABID97_RS04340at 892.527 kb on + strand, within ABID97_RS04340at 892.527 kb on + strand, within ABID97_RS04340at 892.527 kb on + strand, within ABID97_RS04340at 892.533 kb on + strand, within ABID97_RS04340at 892.534 kb on - strand, within ABID97_RS04340at 892.534 kb on - strand, within ABID97_RS04340at 892.534 kb on - strand, within ABID97_RS04340at 892.563 kb on + strand, within ABID97_RS04340at 892.729 kb on - strand, within ABID97_RS04340at 892.750 kb on - strand, within ABID97_RS04340at 892.750 kb on - strand, within ABID97_RS04340at 892.764 kb on + strand, within ABID97_RS04340at 892.764 kb on + strand, within ABID97_RS04340at 892.764 kb on + strand, within ABID97_RS04340at 892.764 kb on + strand, within ABID97_RS04340at 892.905 kb on + strandat 892.905 kb on + strandat 892.906 kb on - strandat 892.926 kb on + strandat 892.927 kb on - strandat 892.947 kb on + strandat 892.947 kb on + strandat 892.948 kb on - strandat 893.103 kb on + strandat 893.103 kb on + strandat 893.104 kb on - strandat 893.104 kb on - strandat 893.104 kb on - strandat 893.104 kb on - strandat 893.176 kb on + strandat 893.177 kb on - strandat 893.177 kb on - strandat 893.613 kb on + strand, within ABID97_RS04345at 893.613 kb on + strand, within ABID97_RS04345at 893.907 kb on + strand, within ABID97_RS04345

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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889,264 + +0.1
889,265 - +0.2
889,291 + +0.5
889,291 + +0.7
889,292 - -0.2
889,292 - -0.2
889,436 + -0.6
889,436 + -0.0
889,436 + +0.1
889,592 + ABID97_RS04335 0.11 -0.8
889,592 + ABID97_RS04335 0.11 +0.2
889,593 - ABID97_RS04335 0.12 -0.4
889,593 - ABID97_RS04335 0.12 +0.0
889,593 - ABID97_RS04335 0.12 +0.0
889,627 + ABID97_RS04335 0.19 +0.7
889,627 + ABID97_RS04335 0.19 +0.2
889,628 - ABID97_RS04335 0.19 +1.0
889,628 - ABID97_RS04335 0.19 +0.8
889,688 + ABID97_RS04335 0.32 +0.3
889,688 + ABID97_RS04335 0.32 -0.1
889,688 + ABID97_RS04335 0.32 +0.6
889,689 - ABID97_RS04335 0.33 -0.1
889,702 + ABID97_RS04335 0.36 -0.7
889,703 - ABID97_RS04335 0.36 +0.0
889,723 + ABID97_RS04335 0.40 -0.4
889,723 + ABID97_RS04335 0.40 +0.0
889,724 - ABID97_RS04335 0.40 -1.2
889,724 - ABID97_RS04335 0.40 +0.2
889,724 - ABID97_RS04335 0.40 +1.4
889,738 + ABID97_RS04335 0.43 -1.9
889,787 - ABID97_RS04335 0.54 +0.1
889,787 - ABID97_RS04335 0.54 -0.1
889,816 + ABID97_RS04335 0.61 -0.6
889,817 - ABID97_RS04335 0.61 +0.1
889,862 - ABID97_RS04335 0.71 -0.3
889,958 + +1.0
889,959 - -0.6
890,319 + -2.2
890,319 + -0.8
890,319 + -1.1
890,319 + -0.6
890,319 + -1.4
890,320 - -1.7
890,421 + ABID97_RS04340 0.12 -1.7
890,421 + ABID97_RS04340 0.12 -0.6
890,541 + ABID97_RS04340 0.16 -2.3
890,541 + ABID97_RS04340 0.16 -2.5
890,542 - ABID97_RS04340 0.16 -1.7
890,542 - ABID97_RS04340 0.16 -2.7
890,542 - ABID97_RS04340 0.16 -1.2
890,542 - ABID97_RS04340 0.16 -2.2
890,568 + ABID97_RS04340 0.16 -1.7
890,569 - ABID97_RS04340 0.16 -1.0
890,569 - ABID97_RS04340 0.16 -2.2
890,601 + ABID97_RS04340 0.17 -1.5
890,601 + ABID97_RS04340 0.17 -1.9
890,601 + ABID97_RS04340 0.17 -1.2
890,601 + ABID97_RS04340 0.17 -1.2
890,601 + ABID97_RS04340 0.17 -1.1
890,601 + ABID97_RS04340 0.17 -0.9
890,601 + ABID97_RS04340 0.17 -1.5
890,601 + ABID97_RS04340 0.17 -1.1
890,601 + ABID97_RS04340 0.17 -1.2
890,601 + ABID97_RS04340 0.17 -1.0
890,601 + ABID97_RS04340 0.17 -2.0
890,601 + ABID97_RS04340 0.17 -1.3
890,602 - ABID97_RS04340 0.17 -2.0
890,602 - ABID97_RS04340 0.17 -1.7
890,602 - ABID97_RS04340 0.17 -1.1
890,602 - ABID97_RS04340 0.17 -2.0
890,769 + ABID97_RS04340 0.23 -1.2
890,769 + ABID97_RS04340 0.23 -0.9
890,770 - ABID97_RS04340 0.23 +0.1
890,770 - ABID97_RS04340 0.23 -1.6
890,770 - ABID97_RS04340 0.23 -0.6
890,889 + ABID97_RS04340 0.27 -1.4
890,913 + ABID97_RS04340 0.27 -0.6
891,219 + ABID97_RS04340 0.37 -2.1
891,219 + ABID97_RS04340 0.37 -0.9
891,261 + ABID97_RS04340 0.39 -0.9
891,261 + ABID97_RS04340 0.39 -1.4
891,261 + ABID97_RS04340 0.39 -1.9
891,262 - ABID97_RS04340 0.39 -2.5
891,262 - ABID97_RS04340 0.39 -2.7
891,262 - ABID97_RS04340 0.39 -1.7
891,262 - ABID97_RS04340 0.39 -2.5
891,262 - ABID97_RS04340 0.39 -1.0
891,462 + ABID97_RS04340 0.45 -2.0
891,462 + ABID97_RS04340 0.45 -1.8
891,462 + ABID97_RS04340 0.45 -0.8
891,462 + ABID97_RS04340 0.45 -1.4
891,462 + ABID97_RS04340 0.45 -0.9
891,463 - ABID97_RS04340 0.45 -2.0
891,463 - ABID97_RS04340 0.45 -1.9
891,463 - ABID97_RS04340 0.45 -2.2
891,463 - ABID97_RS04340 0.45 -1.9
891,463 - ABID97_RS04340 0.45 -1.5
891,463 - ABID97_RS04340 0.45 -1.6
891,561 + ABID97_RS04340 0.48 -1.6
891,562 - ABID97_RS04340 0.48 -1.4
891,562 - ABID97_RS04340 0.48 -1.2
891,562 - ABID97_RS04340 0.48 +0.1
891,562 - ABID97_RS04340 0.48 -1.8
891,963 + ABID97_RS04340 0.61 -2.3
891,963 + ABID97_RS04340 0.61 -1.2
891,963 + ABID97_RS04340 0.61 -1.9
891,964 - ABID97_RS04340 0.61 -1.8
891,964 - ABID97_RS04340 0.61 -1.8
891,964 - ABID97_RS04340 0.61 -0.5
891,964 - ABID97_RS04340 0.61 -1.5
891,964 - ABID97_RS04340 0.61 -0.9
892,059 + ABID97_RS04340 0.64 -0.7
892,060 - ABID97_RS04340 0.64 -1.1
892,060 - ABID97_RS04340 0.64 -1.3
892,092 + ABID97_RS04340 0.65 -1.6
892,092 + ABID97_RS04340 0.65 +1.0
892,093 - ABID97_RS04340 0.65 -1.7
892,095 + ABID97_RS04340 0.65 -1.5
892,096 - ABID97_RS04340 0.65 -1.2
892,527 + ABID97_RS04340 0.79 -1.7
892,527 + ABID97_RS04340 0.79 -1.2
892,527 + ABID97_RS04340 0.79 -1.9
892,533 + ABID97_RS04340 0.79 -1.5
892,534 - ABID97_RS04340 0.79 -1.4
892,534 - ABID97_RS04340 0.79 -2.0
892,534 - ABID97_RS04340 0.79 -1.5
892,563 + ABID97_RS04340 0.80 -1.2
892,729 - ABID97_RS04340 0.86 -2.3
892,750 - ABID97_RS04340 0.86 -1.3
892,750 - ABID97_RS04340 0.86 -2.0
892,764 + ABID97_RS04340 0.87 -1.3
892,764 + ABID97_RS04340 0.87 -0.0
892,764 + ABID97_RS04340 0.87 +0.1
892,764 + ABID97_RS04340 0.87 -1.6
892,905 + -1.6
892,905 + -2.3
892,906 - -1.2
892,926 + -1.5
892,927 - -1.9
892,947 + -0.2
892,947 + -1.6
892,948 - +0.1
893,103 + -1.7
893,103 + +0.1
893,104 - -0.9
893,104 - +1.0
893,104 - -1.9
893,104 - -1.4
893,176 + +1.0
893,177 - +1.2
893,177 - +0.7
893,613 + ABID97_RS04345 0.30 +0.1
893,613 + ABID97_RS04345 0.30 +0.4
893,907 + ABID97_RS04345 0.52 +0.8

Or see this region's nucleotide sequence