Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04135 and ABID97_RS04140 are separated by 5 nucleotides ABID97_RS04140 and ABID97_RS04145 are separated by 14 nucleotides ABID97_RS04145 and ABID97_RS04150 are separated by 43 nucleotides
ABID97_RS04135: ABID97_RS04135 - acyl-CoA dehydrogenase family protein, at 847,555 to 848,721
_RS04135
ABID97_RS04140: ABID97_RS04140 - acyl-CoA dehydrogenase family protein, at 848,727 to 849,887
_RS04140
ABID97_RS04145: ABID97_RS04145 - SDR family oxidoreductase, at 849,902 to 850,819
_RS04145
ABID97_RS04150: ABID97_RS04150 - acetyl-CoA carboxylase biotin carboxylase subunit, at 850,863 to 852,812
_RS04150
Position (kb) 848
849
850 Strain fitness (log2 ratio) -1
0
1 at 848.276 kb on + strand, within ABID97_RS04135 at 848.276 kb on + strand, within ABID97_RS04135 at 848.276 kb on + strand, within ABID97_RS04135 at 848.277 kb on - strand, within ABID97_RS04135 at 848.277 kb on - strand, within ABID97_RS04135 at 848.277 kb on - strand, within ABID97_RS04135 at 848.525 kb on + strand, within ABID97_RS04135 at 848.526 kb on - strand, within ABID97_RS04135 at 848.597 kb on + strand, within ABID97_RS04135 at 849.445 kb on + strand, within ABID97_RS04140 at 849.880 kb on + strand at 849.880 kb on + strand at 849.880 kb on + strand at 849.881 kb on - strand at 849.881 kb on - strand at 850.227 kb on + strand, within ABID97_RS04145 at 850.228 kb on - strand, within ABID97_RS04145 at 850.500 kb on + strand, within ABID97_RS04145 at 850.500 kb on + strand, within ABID97_RS04145 at 850.501 kb on - strand, within ABID97_RS04145
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 848,276 + ABID97_RS04135 0.62 +0.4 848,276 + ABID97_RS04135 0.62 +0.4 848,276 + ABID97_RS04135 0.62 +0.5 848,277 - ABID97_RS04135 0.62 +0.3 848,277 - ABID97_RS04135 0.62 +0.3 848,277 - ABID97_RS04135 0.62 +0.2 848,525 + ABID97_RS04135 0.83 +0.3 848,526 - ABID97_RS04135 0.83 +0.5 848,597 + ABID97_RS04135 0.89 +0.4 849,445 + ABID97_RS04140 0.62 +0.2 849,880 + -0.1 849,880 + +0.6 849,880 + -0.8 849,881 - -0.1 849,881 - +0.3 850,227 + ABID97_RS04145 0.35 +0.1 850,228 - ABID97_RS04145 0.36 +0.8 850,500 + ABID97_RS04145 0.65 -0.2 850,500 + ABID97_RS04145 0.65 -0.2 850,501 - ABID97_RS04145 0.65 -0.2
Or see this region's nucleotide sequence