Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03470

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03460 and ABID97_RS03465 are separated by 104 nucleotidesABID97_RS03465 and ABID97_RS03470 are separated by 215 nucleotidesABID97_RS03470 and ABID97_RS03475 are separated by 52 nucleotides ABID97_RS03460: ABID97_RS03460 - LysR family transcriptional regulator, at 703,840 to 704,757 _RS03460 ABID97_RS03465: ABID97_RS03465 - PACE efflux transporter, at 704,862 to 705,317 _RS03465 ABID97_RS03470: ABID97_RS03470 - methionine synthase, at 705,533 to 708,247 _RS03470 ABID97_RS03475: ABID97_RS03475 - hypothetical protein, at 708,300 to 710,099 _RS03475 Position (kb) 705 706 707 708 709Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 704.644 kb on + strand, within ABID97_RS03460at 704.645 kb on - strand, within ABID97_RS03460at 704.804 kb on - strandat 704.889 kb on + strandat 704.889 kb on + strandat 704.889 kb on + strandat 704.889 kb on + strandat 704.889 kb on + strandat 704.889 kb on + strandat 704.889 kb on + strandat 704.889 kb on + strandat 704.890 kb on - strandat 704.890 kb on - strandat 704.890 kb on - strandat 704.890 kb on - strandat 704.890 kb on - strandat 704.890 kb on - strandat 704.890 kb on - strandat 705.219 kb on + strand, within ABID97_RS03465at 705.219 kb on + strand, within ABID97_RS03465at 705.995 kb on + strand, within ABID97_RS03470at 705.996 kb on - strand, within ABID97_RS03470at 705.996 kb on - strand, within ABID97_RS03470at 705.996 kb on - strand, within ABID97_RS03470at 705.996 kb on - strand, within ABID97_RS03470at 705.996 kb on - strand, within ABID97_RS03470at 705.996 kb on - strand, within ABID97_RS03470at 705.996 kb on - strand, within ABID97_RS03470at 706.028 kb on + strand, within ABID97_RS03470at 706.127 kb on + strand, within ABID97_RS03470at 706.127 kb on + strand, within ABID97_RS03470at 706.127 kb on + strand, within ABID97_RS03470at 706.128 kb on - strand, within ABID97_RS03470at 706.128 kb on - strand, within ABID97_RS03470at 706.128 kb on - strand, within ABID97_RS03470at 706.128 kb on - strand, within ABID97_RS03470at 706.269 kb on - strand, within ABID97_RS03470at 706.328 kb on + strand, within ABID97_RS03470at 706.328 kb on + strand, within ABID97_RS03470at 706.328 kb on + strand, within ABID97_RS03470at 706.328 kb on + strand, within ABID97_RS03470at 706.568 kb on + strand, within ABID97_RS03470at 706.569 kb on - strand, within ABID97_RS03470at 706.736 kb on + strand, within ABID97_RS03470at 707.000 kb on + strand, within ABID97_RS03470at 707.000 kb on + strand, within ABID97_RS03470at 707.000 kb on + strand, within ABID97_RS03470at 707.000 kb on + strand, within ABID97_RS03470at 707.000 kb on + strand, within ABID97_RS03470at 707.000 kb on + strand, within ABID97_RS03470at 707.001 kb on - strand, within ABID97_RS03470at 707.001 kb on - strand, within ABID97_RS03470at 707.001 kb on - strand, within ABID97_RS03470at 707.001 kb on - strand, within ABID97_RS03470at 707.115 kb on - strand, within ABID97_RS03470at 707.115 kb on - strand, within ABID97_RS03470at 707.132 kb on + strand, within ABID97_RS03470at 707.132 kb on + strand, within ABID97_RS03470at 707.132 kb on + strand, within ABID97_RS03470at 707.132 kb on + strand, within ABID97_RS03470at 707.132 kb on + strand, within ABID97_RS03470at 707.132 kb on + strand, within ABID97_RS03470at 707.132 kb on + strand, within ABID97_RS03470at 707.133 kb on - strand, within ABID97_RS03470at 707.133 kb on - strand, within ABID97_RS03470at 707.133 kb on - strand, within ABID97_RS03470at 707.133 kb on - strand, within ABID97_RS03470at 707.198 kb on + strand, within ABID97_RS03470at 707.199 kb on - strand, within ABID97_RS03470at 707.199 kb on - strand, within ABID97_RS03470at 707.321 kb on + strand, within ABID97_RS03470at 707.322 kb on - strand, within ABID97_RS03470at 707.322 kb on - strand, within ABID97_RS03470at 707.393 kb on + strand, within ABID97_RS03470at 707.393 kb on + strand, within ABID97_RS03470at 707.393 kb on + strand, within ABID97_RS03470at 707.393 kb on + strand, within ABID97_RS03470at 707.393 kb on + strand, within ABID97_RS03470at 707.393 kb on + strand, within ABID97_RS03470at 707.394 kb on - strand, within ABID97_RS03470at 707.394 kb on - strand, within ABID97_RS03470at 707.394 kb on - strand, within ABID97_RS03470at 707.492 kb on + strand, within ABID97_RS03470at 707.493 kb on - strand, within ABID97_RS03470at 707.493 kb on - strand, within ABID97_RS03470at 707.493 kb on - strand, within ABID97_RS03470at 707.607 kb on - strand, within ABID97_RS03470at 707.607 kb on - strand, within ABID97_RS03470at 707.607 kb on - strand, within ABID97_RS03470at 707.607 kb on - strand, within ABID97_RS03470at 707.645 kb on + strand, within ABID97_RS03470at 707.750 kb on + strand, within ABID97_RS03470at 707.750 kb on + strand, within ABID97_RS03470at 707.750 kb on + strand, within ABID97_RS03470at 707.750 kb on + strand, within ABID97_RS03470at 707.751 kb on - strand, within ABID97_RS03470at 707.751 kb on - strand, within ABID97_RS03470at 707.751 kb on - strand, within ABID97_RS03470at 707.751 kb on - strand, within ABID97_RS03470at 707.751 kb on - strand, within ABID97_RS03470at 707.751 kb on - strand, within ABID97_RS03470at 707.804 kb on + strand, within ABID97_RS03470at 707.804 kb on + strand, within ABID97_RS03470at 707.804 kb on + strand, within ABID97_RS03470at 707.805 kb on - strand, within ABID97_RS03470at 707.805 kb on - strand, within ABID97_RS03470at 707.805 kb on - strand, within ABID97_RS03470at 707.805 kb on - strand, within ABID97_RS03470at 707.805 kb on - strand, within ABID97_RS03470at 707.805 kb on - strand, within ABID97_RS03470at 707.828 kb on + strand, within ABID97_RS03470at 707.828 kb on + strand, within ABID97_RS03470at 707.828 kb on + strand, within ABID97_RS03470at 707.921 kb on + strand, within ABID97_RS03470at 707.921 kb on + strand, within ABID97_RS03470at 707.921 kb on + strand, within ABID97_RS03470at 707.922 kb on - strand, within ABID97_RS03470at 708.088 kb on + strandat 708.088 kb on + strandat 708.088 kb on + strandat 708.088 kb on + strandat 708.089 kb on - strandat 708.120 kb on - strandat 708.143 kb on + strandat 708.144 kb on - strandat 708.287 kb on + strandat 708.287 kb on + strandat 708.288 kb on - strandat 708.288 kb on - strandat 708.702 kb on + strand, within ABID97_RS03475at 708.702 kb on + strand, within ABID97_RS03475at 708.702 kb on + strand, within ABID97_RS03475at 708.702 kb on + strand, within ABID97_RS03475at 708.702 kb on + strand, within ABID97_RS03475at 708.703 kb on - strand, within ABID97_RS03475at 708.715 kb on - strand, within ABID97_RS03475at 708.784 kb on - strand, within ABID97_RS03475at 708.789 kb on + strand, within ABID97_RS03475at 708.789 kb on + strand, within ABID97_RS03475at 708.789 kb on + strand, within ABID97_RS03475at 708.789 kb on + strand, within ABID97_RS03475at 708.790 kb on - strand, within ABID97_RS03475at 708.790 kb on - strand, within ABID97_RS03475at 708.790 kb on - strand, within ABID97_RS03475at 708.790 kb on - strand, within ABID97_RS03475at 708.790 kb on - strand, within ABID97_RS03475at 708.790 kb on - strand, within ABID97_RS03475at 708.801 kb on + strand, within ABID97_RS03475at 708.802 kb on - strand, within ABID97_RS03475at 708.802 kb on - strand, within ABID97_RS03475at 708.960 kb on + strand, within ABID97_RS03475at 708.976 kb on + strand, within ABID97_RS03475at 708.976 kb on + strand, within ABID97_RS03475at 708.976 kb on + strand, within ABID97_RS03475at 708.976 kb on + strand, within ABID97_RS03475at 708.977 kb on - strand, within ABID97_RS03475at 709.222 kb on - strand, within ABID97_RS03475at 709.228 kb on - strand, within ABID97_RS03475at 709.228 kb on - strand, within ABID97_RS03475

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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704,644 + ABID97_RS03460 0.88 +0.4
704,645 - ABID97_RS03460 0.88 +0.1
704,804 - -0.1
704,889 + -0.7
704,889 + -1.2
704,889 + -1.6
704,889 + -0.2
704,889 + -0.3
704,889 + +1.0
704,889 + -0.5
704,889 + -0.7
704,890 - -0.2
704,890 - -0.2
704,890 - -1.1
704,890 - -0.4
704,890 - -0.6
704,890 - -0.9
704,890 - -0.7
705,219 + ABID97_RS03465 0.78 -0.8
705,219 + ABID97_RS03465 0.78 -0.5
705,995 + ABID97_RS03470 0.17 +0.2
705,996 - ABID97_RS03470 0.17 -2.7
705,996 - ABID97_RS03470 0.17 -1.6
705,996 - ABID97_RS03470 0.17 -3.4
705,996 - ABID97_RS03470 0.17 -4.1
705,996 - ABID97_RS03470 0.17 -2.8
705,996 - ABID97_RS03470 0.17 -4.6
705,996 - ABID97_RS03470 0.17 -2.6
706,028 + ABID97_RS03470 0.18 -2.2
706,127 + ABID97_RS03470 0.22 -2.3
706,127 + ABID97_RS03470 0.22 -1.4
706,127 + ABID97_RS03470 0.22 -3.9
706,128 - ABID97_RS03470 0.22 -1.8
706,128 - ABID97_RS03470 0.22 -3.2
706,128 - ABID97_RS03470 0.22 -3.1
706,128 - ABID97_RS03470 0.22 +0.2
706,269 - ABID97_RS03470 0.27 -2.5
706,328 + ABID97_RS03470 0.29 -3.1
706,328 + ABID97_RS03470 0.29 -2.0
706,328 + ABID97_RS03470 0.29 -2.4
706,328 + ABID97_RS03470 0.29 -2.3
706,568 + ABID97_RS03470 0.38 -4.4
706,569 - ABID97_RS03470 0.38 -1.0
706,736 + ABID97_RS03470 0.44 -2.2
707,000 + ABID97_RS03470 0.54 -3.5
707,000 + ABID97_RS03470 0.54 -1.8
707,000 + ABID97_RS03470 0.54 -3.0
707,000 + ABID97_RS03470 0.54 -2.2
707,000 + ABID97_RS03470 0.54 -1.7
707,000 + ABID97_RS03470 0.54 -3.4
707,001 - ABID97_RS03470 0.54 -3.3
707,001 - ABID97_RS03470 0.54 -1.6
707,001 - ABID97_RS03470 0.54 -2.6
707,001 - ABID97_RS03470 0.54 -4.4
707,115 - ABID97_RS03470 0.58 -3.8
707,115 - ABID97_RS03470 0.58 -2.3
707,132 + ABID97_RS03470 0.59 -3.5
707,132 + ABID97_RS03470 0.59 -2.4
707,132 + ABID97_RS03470 0.59 -3.2
707,132 + ABID97_RS03470 0.59 -3.4
707,132 + ABID97_RS03470 0.59 -3.0
707,132 + ABID97_RS03470 0.59 -1.5
707,132 + ABID97_RS03470 0.59 -2.4
707,133 - ABID97_RS03470 0.59 -3.4
707,133 - ABID97_RS03470 0.59 -2.9
707,133 - ABID97_RS03470 0.59 -2.0
707,133 - ABID97_RS03470 0.59 -0.5
707,198 + ABID97_RS03470 0.61 -4.1
707,199 - ABID97_RS03470 0.61 -2.3
707,199 - ABID97_RS03470 0.61 -2.9
707,321 + ABID97_RS03470 0.66 -3.2
707,322 - ABID97_RS03470 0.66 -2.4
707,322 - ABID97_RS03470 0.66 -2.7
707,393 + ABID97_RS03470 0.69 -3.0
707,393 + ABID97_RS03470 0.69 -1.5
707,393 + ABID97_RS03470 0.69 -1.5
707,393 + ABID97_RS03470 0.69 -2.5
707,393 + ABID97_RS03470 0.69 -3.1
707,393 + ABID97_RS03470 0.69 -3.3
707,394 - ABID97_RS03470 0.69 -2.5
707,394 - ABID97_RS03470 0.69 -2.4
707,394 - ABID97_RS03470 0.69 -2.2
707,492 + ABID97_RS03470 0.72 -2.9
707,493 - ABID97_RS03470 0.72 -3.8
707,493 - ABID97_RS03470 0.72 -0.5
707,493 - ABID97_RS03470 0.72 -2.1
707,607 - ABID97_RS03470 0.76 -2.6
707,607 - ABID97_RS03470 0.76 -2.5
707,607 - ABID97_RS03470 0.76 -4.0
707,607 - ABID97_RS03470 0.76 +0.8
707,645 + ABID97_RS03470 0.78 +0.8
707,750 + ABID97_RS03470 0.82 -1.9
707,750 + ABID97_RS03470 0.82 -2.1
707,750 + ABID97_RS03470 0.82 -1.7
707,750 + ABID97_RS03470 0.82 -1.8
707,751 - ABID97_RS03470 0.82 -2.0
707,751 - ABID97_RS03470 0.82 -3.0
707,751 - ABID97_RS03470 0.82 -1.4
707,751 - ABID97_RS03470 0.82 -1.9
707,751 - ABID97_RS03470 0.82 -3.6
707,751 - ABID97_RS03470 0.82 -3.1
707,804 + ABID97_RS03470 0.84 -1.8
707,804 + ABID97_RS03470 0.84 -3.8
707,804 + ABID97_RS03470 0.84 -1.2
707,805 - ABID97_RS03470 0.84 -3.5
707,805 - ABID97_RS03470 0.84 -3.0
707,805 - ABID97_RS03470 0.84 -1.4
707,805 - ABID97_RS03470 0.84 -1.9
707,805 - ABID97_RS03470 0.84 -1.3
707,805 - ABID97_RS03470 0.84 -3.6
707,828 + ABID97_RS03470 0.85 -2.2
707,828 + ABID97_RS03470 0.85 -2.2
707,828 + ABID97_RS03470 0.85 -2.2
707,921 + ABID97_RS03470 0.88 -2.9
707,921 + ABID97_RS03470 0.88 -2.4
707,921 + ABID97_RS03470 0.88 -2.2
707,922 - ABID97_RS03470 0.88 -1.7
708,088 + -2.6
708,088 + -2.2
708,088 + -1.8
708,088 + -2.1
708,089 - -2.5
708,120 - -4.0
708,143 + -0.9
708,144 - -3.0
708,287 + -0.3
708,287 + -0.6
708,288 - -0.0
708,288 - +0.8
708,702 + ABID97_RS03475 0.22 +1.1
708,702 + ABID97_RS03475 0.22 +1.4
708,702 + ABID97_RS03475 0.22 +1.8
708,702 + ABID97_RS03475 0.22 +1.9
708,702 + ABID97_RS03475 0.22 +1.7
708,703 - ABID97_RS03475 0.22 +1.4
708,715 - ABID97_RS03475 0.23 +1.0
708,784 - ABID97_RS03475 0.27 +1.2
708,789 + ABID97_RS03475 0.27 +0.9
708,789 + ABID97_RS03475 0.27 +1.4
708,789 + ABID97_RS03475 0.27 +1.0
708,789 + ABID97_RS03475 0.27 +0.2
708,790 - ABID97_RS03475 0.27 +1.1
708,790 - ABID97_RS03475 0.27 +1.6
708,790 - ABID97_RS03475 0.27 +0.3
708,790 - ABID97_RS03475 0.27 +0.8
708,790 - ABID97_RS03475 0.27 +1.2
708,790 - ABID97_RS03475 0.27 +1.2
708,801 + ABID97_RS03475 0.28 +0.9
708,802 - ABID97_RS03475 0.28 +1.2
708,802 - ABID97_RS03475 0.28 +1.4
708,960 + ABID97_RS03475 0.37 +2.0
708,976 + ABID97_RS03475 0.38 +0.8
708,976 + ABID97_RS03475 0.38 +1.3
708,976 + ABID97_RS03475 0.38 +1.9
708,976 + ABID97_RS03475 0.38 +1.6
708,977 - ABID97_RS03475 0.38 +1.5
709,222 - ABID97_RS03475 0.51 +0.9
709,228 - ABID97_RS03475 0.52 +1.3
709,228 - ABID97_RS03475 0.52 +1.3

Or see this region's nucleotide sequence