Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03450

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03440 and ABID97_RS03445 are separated by 4 nucleotidesABID97_RS03445 and ABID97_RS03450 are separated by 48 nucleotidesABID97_RS03450 and ABID97_RS03455 are separated by 82 nucleotidesABID97_RS03455 and ABID97_RS03460 are separated by 0 nucleotides ABID97_RS03440: ABID97_RS03440 - formimidoylglutamate deiminase, at 699,611 to 701,023 _RS03440 ABID97_RS03445: ABID97_RS03445 - N-formylglutamate deformylase, at 701,028 to 701,843 _RS03445 ABID97_RS03450: ABID97_RS03450 - homocysteine S-methyltransferase family protein, at 701,892 to 702,938 _RS03450 ABID97_RS03455: ABID97_RS03455 - SH3 domain-containing protein, at 703,021 to 703,839 _RS03455 ABID97_RS03460: ABID97_RS03460 - LysR family transcriptional regulator, at 703,840 to 704,757 _RS03460 Position (kb) 701 702 703Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 700.942 kb on - strandat 701.247 kb on + strand, within ABID97_RS03445at 701.328 kb on - strand, within ABID97_RS03445at 701.328 kb on - strand, within ABID97_RS03445at 701.349 kb on + strand, within ABID97_RS03445at 701.350 kb on - strand, within ABID97_RS03445at 701.350 kb on - strand, within ABID97_RS03445at 701.350 kb on - strand, within ABID97_RS03445at 701.733 kb on + strand, within ABID97_RS03445at 701.734 kb on - strand, within ABID97_RS03445at 701.734 kb on - strand, within ABID97_RS03445at 701.734 kb on - strand, within ABID97_RS03445at 701.734 kb on - strand, within ABID97_RS03445at 701.760 kb on + strand, within ABID97_RS03445at 701.842 kb on - strandat 701.879 kb on - strandat 701.879 kb on - strandat 701.892 kb on - strandat 701.907 kb on + strandat 701.907 kb on + strandat 701.907 kb on + strandat 701.907 kb on + strandat 702.012 kb on + strand, within ABID97_RS03450at 702.114 kb on + strand, within ABID97_RS03450at 702.183 kb on + strand, within ABID97_RS03450at 702.183 kb on + strand, within ABID97_RS03450at 702.184 kb on - strand, within ABID97_RS03450at 702.384 kb on + strand, within ABID97_RS03450at 702.384 kb on + strand, within ABID97_RS03450at 702.384 kb on + strand, within ABID97_RS03450at 702.387 kb on + strand, within ABID97_RS03450at 702.387 kb on + strand, within ABID97_RS03450at 702.387 kb on + strand, within ABID97_RS03450at 702.388 kb on - strand, within ABID97_RS03450at 702.388 kb on - strand, within ABID97_RS03450at 702.388 kb on - strand, within ABID97_RS03450at 702.388 kb on - strand, within ABID97_RS03450at 702.492 kb on + strand, within ABID97_RS03450at 702.493 kb on - strand, within ABID97_RS03450at 702.666 kb on + strand, within ABID97_RS03450at 702.666 kb on + strand, within ABID97_RS03450at 702.666 kb on + strand, within ABID97_RS03450at 702.666 kb on + strand, within ABID97_RS03450at 702.666 kb on + strand, within ABID97_RS03450at 702.667 kb on - strand, within ABID97_RS03450at 702.667 kb on - strand, within ABID97_RS03450at 702.667 kb on - strand, within ABID97_RS03450at 702.667 kb on - strand, within ABID97_RS03450at 703.027 kb on + strandat 703.027 kb on + strandat 703.027 kb on + strandat 703.027 kb on + strandat 703.028 kb on - strandat 703.028 kb on - strandat 703.151 kb on - strand, within ABID97_RS03455at 703.279 kb on + strand, within ABID97_RS03455at 703.280 kb on - strand, within ABID97_RS03455at 703.280 kb on - strand, within ABID97_RS03455at 703.280 kb on - strand, within ABID97_RS03455at 703.280 kb on - strand, within ABID97_RS03455at 703.316 kb on - strand, within ABID97_RS03455at 703.364 kb on - strand, within ABID97_RS03455at 703.364 kb on - strand, within ABID97_RS03455at 703.376 kb on - strand, within ABID97_RS03455at 703.376 kb on - strand, within ABID97_RS03455at 703.376 kb on - strand, within ABID97_RS03455at 703.378 kb on + strand, within ABID97_RS03455at 703.379 kb on - strand, within ABID97_RS03455at 703.379 kb on - strand, within ABID97_RS03455at 703.396 kb on + strand, within ABID97_RS03455at 703.837 kb on + strandat 703.837 kb on + strandat 703.838 kb on - strandat 703.841 kb on + strandat 703.841 kb on + strandat 703.842 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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700,942 - +0.1
701,247 + ABID97_RS03445 0.27 -1.0
701,328 - ABID97_RS03445 0.37 +0.1
701,328 - ABID97_RS03445 0.37 +0.2
701,349 + ABID97_RS03445 0.39 -0.3
701,350 - ABID97_RS03445 0.39 +0.8
701,350 - ABID97_RS03445 0.39 -0.5
701,350 - ABID97_RS03445 0.39 +0.1
701,733 + ABID97_RS03445 0.86 +0.4
701,734 - ABID97_RS03445 0.87 +0.2
701,734 - ABID97_RS03445 0.87 -0.0
701,734 - ABID97_RS03445 0.87 -0.4
701,734 - ABID97_RS03445 0.87 -0.1
701,760 + ABID97_RS03445 0.90 -0.4
701,842 - -0.2
701,879 - -0.8
701,879 - -0.3
701,892 - -0.7
701,907 + -1.8
701,907 + -0.8
701,907 + -2.1
701,907 + -2.6
702,012 + ABID97_RS03450 0.11 -1.8
702,114 + ABID97_RS03450 0.21 -3.1
702,183 + ABID97_RS03450 0.28 -2.9
702,183 + ABID97_RS03450 0.28 -2.8
702,184 - ABID97_RS03450 0.28 -4.3
702,384 + ABID97_RS03450 0.47 -1.7
702,384 + ABID97_RS03450 0.47 -3.2
702,384 + ABID97_RS03450 0.47 -3.5
702,387 + ABID97_RS03450 0.47 -3.2
702,387 + ABID97_RS03450 0.47 -3.8
702,387 + ABID97_RS03450 0.47 -2.4
702,388 - ABID97_RS03450 0.47 -4.2
702,388 - ABID97_RS03450 0.47 -2.4
702,388 - ABID97_RS03450 0.47 -2.8
702,388 - ABID97_RS03450 0.47 -2.8
702,492 + ABID97_RS03450 0.57 -4.1
702,493 - ABID97_RS03450 0.57 -1.9
702,666 + ABID97_RS03450 0.74 -3.3
702,666 + ABID97_RS03450 0.74 -1.4
702,666 + ABID97_RS03450 0.74 -2.7
702,666 + ABID97_RS03450 0.74 -3.0
702,666 + ABID97_RS03450 0.74 -2.7
702,667 - ABID97_RS03450 0.74 -1.6
702,667 - ABID97_RS03450 0.74 -2.3
702,667 - ABID97_RS03450 0.74 -0.8
702,667 - ABID97_RS03450 0.74 -0.5
703,027 + +0.5
703,027 + -0.1
703,027 + -0.4
703,027 + -0.1
703,028 - +0.3
703,028 - -0.2
703,151 - ABID97_RS03455 0.16 +0.3
703,279 + ABID97_RS03455 0.32 +0.1
703,280 - ABID97_RS03455 0.32 +0.2
703,280 - ABID97_RS03455 0.32 +0.2
703,280 - ABID97_RS03455 0.32 -0.3
703,280 - ABID97_RS03455 0.32 -0.4
703,316 - ABID97_RS03455 0.36 -0.3
703,364 - ABID97_RS03455 0.42 +0.0
703,364 - ABID97_RS03455 0.42 -0.8
703,376 - ABID97_RS03455 0.43 +1.0
703,376 - ABID97_RS03455 0.43 +0.6
703,376 - ABID97_RS03455 0.43 -0.2
703,378 + ABID97_RS03455 0.44 -0.1
703,379 - ABID97_RS03455 0.44 +0.3
703,379 - ABID97_RS03455 0.44 -0.5
703,396 + ABID97_RS03455 0.46 -0.7
703,837 + +0.4
703,837 + +0.2
703,838 - +0.3
703,841 + +0.3
703,841 + +1.3
703,842 - +0.4

Or see this region's nucleotide sequence