Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02905 and ABID97_RS02910 overlap by 4 nucleotides ABID97_RS02910 and ABID97_RS02915 are separated by 112 nucleotides ABID97_RS02915 and ABID97_RS02920 are separated by 7 nucleotides
ABID97_RS02905: ABID97_RS02905 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 592,371 to 594,323
_RS02905
ABID97_RS02910: ABID97_RS02910 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 594,320 to 594,961
_RS02910
ABID97_RS02915: ABID97_RS02915 - LysE family transporter, at 595,074 to 595,688
_RS02915
ABID97_RS02920: ABID97_RS02920 - ParA family protein, at 595,696 to 596,610
_RS02920
Position (kb) 594
595 Strain fitness (log2 ratio) -1
0
1
2 at 594.408 kb on - strand, within ABID97_RS02910 at 594.440 kb on + strand, within ABID97_RS02910 at 594.441 kb on - strand, within ABID97_RS02910 at 594.441 kb on - strand, within ABID97_RS02910 at 594.448 kb on + strand, within ABID97_RS02910 at 594.734 kb on + strand, within ABID97_RS02910 at 594.734 kb on + strand, within ABID97_RS02910 at 594.734 kb on + strand, within ABID97_RS02910 at 594.734 kb on + strand, within ABID97_RS02910 at 594.734 kb on + strand, within ABID97_RS02910 at 594.735 kb on - strand, within ABID97_RS02910 at 594.735 kb on - strand, within ABID97_RS02910 at 594.735 kb on - strand, within ABID97_RS02910 at 595.033 kb on - strand at 595.033 kb on - strand at 595.033 kb on - strand at 595.092 kb on + strand at 595.092 kb on + strand at 595.278 kb on + strand, within ABID97_RS02915 at 595.320 kb on + strand, within ABID97_RS02915 at 595.320 kb on + strand, within ABID97_RS02915 at 595.452 kb on + strand, within ABID97_RS02915 at 595.452 kb on + strand, within ABID97_RS02915 at 595.452 kb on + strand, within ABID97_RS02915 at 595.452 kb on + strand, within ABID97_RS02915 at 595.452 kb on + strand, within ABID97_RS02915 at 595.452 kb on + strand, within ABID97_RS02915 at 595.452 kb on + strand, within ABID97_RS02915 at 595.452 kb on + strand, within ABID97_RS02915 at 595.452 kb on + strand, within ABID97_RS02915 at 595.453 kb on - strand, within ABID97_RS02915 at 595.551 kb on + strand, within ABID97_RS02915 at 595.551 kb on + strand, within ABID97_RS02915 at 595.551 kb on + strand, within ABID97_RS02915 at 595.551 kb on + strand, within ABID97_RS02915 at 595.551 kb on + strand, within ABID97_RS02915 at 595.551 kb on + strand, within ABID97_RS02915 at 595.551 kb on + strand, within ABID97_RS02915 at 595.551 kb on + strand, within ABID97_RS02915 at 595.551 kb on + strand, within ABID97_RS02915 at 595.551 kb on + strand, within ABID97_RS02915 at 595.613 kb on + strand, within ABID97_RS02915 at 595.613 kb on + strand, within ABID97_RS02915 at 595.695 kb on + strand at 595.695 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 594,408 - ABID97_RS02910 0.14 +1.6 594,440 + ABID97_RS02910 0.19 +0.8 594,441 - ABID97_RS02910 0.19 +1.6 594,441 - ABID97_RS02910 0.19 +1.6 594,448 + ABID97_RS02910 0.20 +1.5 594,734 + ABID97_RS02910 0.64 +1.8 594,734 + ABID97_RS02910 0.64 +1.6 594,734 + ABID97_RS02910 0.64 +2.2 594,734 + ABID97_RS02910 0.64 +1.5 594,734 + ABID97_RS02910 0.64 +1.4 594,735 - ABID97_RS02910 0.65 +2.0 594,735 - ABID97_RS02910 0.65 +1.2 594,735 - ABID97_RS02910 0.65 +1.6 595,033 - +0.8 595,033 - -0.1 595,033 - +0.1 595,092 + -0.7 595,092 + -0.3 595,278 + ABID97_RS02915 0.33 +0.2 595,320 + ABID97_RS02915 0.40 -0.2 595,320 + ABID97_RS02915 0.40 +0.2 595,452 + ABID97_RS02915 0.61 +0.1 595,452 + ABID97_RS02915 0.61 -0.2 595,452 + ABID97_RS02915 0.61 +0.1 595,452 + ABID97_RS02915 0.61 -1.1 595,452 + ABID97_RS02915 0.61 +0.0 595,452 + ABID97_RS02915 0.61 -0.3 595,452 + ABID97_RS02915 0.61 -0.1 595,452 + ABID97_RS02915 0.61 +0.1 595,452 + ABID97_RS02915 0.61 -0.3 595,453 - ABID97_RS02915 0.62 -1.0 595,551 + ABID97_RS02915 0.78 +0.8 595,551 + ABID97_RS02915 0.78 -1.5 595,551 + ABID97_RS02915 0.78 -0.2 595,551 + ABID97_RS02915 0.78 -0.5 595,551 + ABID97_RS02915 0.78 +0.3 595,551 + ABID97_RS02915 0.78 -0.1 595,551 + ABID97_RS02915 0.78 -0.2 595,551 + ABID97_RS02915 0.78 +0.5 595,551 + ABID97_RS02915 0.78 -0.2 595,551 + ABID97_RS02915 0.78 -0.3 595,613 + ABID97_RS02915 0.88 -0.9 595,613 + ABID97_RS02915 0.88 +0.4 595,695 + +0.5 595,695 + +0.8
Or see this region's nucleotide sequence