Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02415

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02405 and ABID97_RS02410 are separated by 14 nucleotidesABID97_RS02410 and ABID97_RS02415 are separated by 145 nucleotidesABID97_RS02415 and ABID97_RS02420 overlap by 4 nucleotidesABID97_RS02420 and ABID97_RS02425 are separated by 97 nucleotidesABID97_RS02425 and ABID97_RS02430 are separated by 76 nucleotides ABID97_RS02405: ABID97_RS02405 - pirin family protein, at 483,915 to 485,075 _RS02405 ABID97_RS02410: ABID97_RS02410 - YciI family protein, at 485,090 to 485,380 _RS02410 ABID97_RS02415: ABID97_RS02415 - M4 family metallopeptidase, at 485,526 to 486,596 _RS02415 ABID97_RS02420: ABID97_RS02420 - protealysin inhibitor emfourin, at 486,593 to 486,931 _RS02420 ABID97_RS02425: ABID97_RS02425 - putative quinol monooxygenase, at 487,029 to 487,337 _RS02425 ABID97_RS02430: ABID97_RS02430 - hypothetical protein, at 487,414 to 488,010 _RS02430 Position (kb) 485 486 487Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 484.740 kb on + strand, within ABID97_RS02405at 484.740 kb on + strand, within ABID97_RS02405at 484.740 kb on + strand, within ABID97_RS02405at 484.740 kb on + strand, within ABID97_RS02405at 484.740 kb on + strand, within ABID97_RS02405at 484.740 kb on + strand, within ABID97_RS02405at 484.740 kb on + strand, within ABID97_RS02405at 484.741 kb on - strand, within ABID97_RS02405at 484.741 kb on - strand, within ABID97_RS02405at 484.741 kb on - strand, within ABID97_RS02405at 484.905 kb on + strand, within ABID97_RS02405at 484.906 kb on - strand, within ABID97_RS02405at 484.960 kb on - strandat 484.960 kb on - strandat 485.292 kb on + strand, within ABID97_RS02410at 485.292 kb on + strand, within ABID97_RS02410at 485.292 kb on + strand, within ABID97_RS02410at 485.292 kb on + strand, within ABID97_RS02410at 485.292 kb on + strand, within ABID97_RS02410at 485.292 kb on + strand, within ABID97_RS02410at 485.293 kb on - strand, within ABID97_RS02410at 485.357 kb on - strandat 485.357 kb on - strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.358 kb on + strandat 485.359 kb on - strandat 485.359 kb on - strandat 485.359 kb on - strandat 485.359 kb on - strandat 485.359 kb on - strandat 485.359 kb on - strandat 485.359 kb on - strandat 485.417 kb on - strandat 485.417 kb on - strandat 485.452 kb on - strandat 485.471 kb on + strandat 485.472 kb on - strandat 485.496 kb on + strandat 485.574 kb on + strandat 485.574 kb on + strandat 485.574 kb on + strandat 485.574 kb on + strandat 485.575 kb on - strandat 485.575 kb on - strandat 485.838 kb on + strand, within ABID97_RS02415at 485.838 kb on + strand, within ABID97_RS02415at 485.838 kb on + strand, within ABID97_RS02415at 485.839 kb on - strand, within ABID97_RS02415at 485.839 kb on - strand, within ABID97_RS02415at 485.839 kb on - strand, within ABID97_RS02415at 485.839 kb on - strand, within ABID97_RS02415at 485.839 kb on - strand, within ABID97_RS02415at 485.839 kb on - strand, within ABID97_RS02415at 485.839 kb on - strand, within ABID97_RS02415at 485.839 kb on - strand, within ABID97_RS02415at 485.844 kb on + strand, within ABID97_RS02415at 485.845 kb on - strand, within ABID97_RS02415at 485.859 kb on + strand, within ABID97_RS02415at 485.859 kb on + strand, within ABID97_RS02415at 485.860 kb on - strand, within ABID97_RS02415at 485.860 kb on - strand, within ABID97_RS02415at 485.868 kb on + strand, within ABID97_RS02415at 485.868 kb on + strand, within ABID97_RS02415at 485.869 kb on - strand, within ABID97_RS02415at 485.869 kb on - strand, within ABID97_RS02415at 485.869 kb on - strand, within ABID97_RS02415at 485.935 kb on - strand, within ABID97_RS02415at 485.935 kb on - strand, within ABID97_RS02415at 485.935 kb on - strand, within ABID97_RS02415at 485.946 kb on + strand, within ABID97_RS02415at 486.087 kb on + strand, within ABID97_RS02415at 486.264 kb on + strand, within ABID97_RS02415at 486.438 kb on + strand, within ABID97_RS02415at 486.439 kb on - strand, within ABID97_RS02415at 486.505 kb on + strandat 486.506 kb on - strandat 486.689 kb on + strand, within ABID97_RS02420at 486.689 kb on + strand, within ABID97_RS02420at 486.689 kb on + strand, within ABID97_RS02420at 486.690 kb on - strand, within ABID97_RS02420at 486.690 kb on - strand, within ABID97_RS02420at 486.690 kb on - strand, within ABID97_RS02420at 486.690 kb on - strand, within ABID97_RS02420at 486.809 kb on + strand, within ABID97_RS02420at 486.810 kb on - strand, within ABID97_RS02420at 486.810 kb on - strand, within ABID97_RS02420at 486.810 kb on - strand, within ABID97_RS02420at 486.986 kb on - strandat 486.986 kb on - strandat 486.986 kb on - strandat 487.199 kb on + strand, within ABID97_RS02425at 487.200 kb on - strand, within ABID97_RS02425at 487.200 kb on - strand, within ABID97_RS02425at 487.370 kb on - strandat 487.528 kb on + strand, within ABID97_RS02430at 487.540 kb on + strand, within ABID97_RS02430at 487.540 kb on + strand, within ABID97_RS02430at 487.540 kb on + strand, within ABID97_RS02430at 487.540 kb on + strand, within ABID97_RS02430at 487.541 kb on - strand, within ABID97_RS02430

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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484,740 + ABID97_RS02405 0.71 -0.3
484,740 + ABID97_RS02405 0.71 -0.2
484,740 + ABID97_RS02405 0.71 +0.1
484,740 + ABID97_RS02405 0.71 -0.5
484,740 + ABID97_RS02405 0.71 +0.9
484,740 + ABID97_RS02405 0.71 +0.7
484,740 + ABID97_RS02405 0.71 -0.2
484,741 - ABID97_RS02405 0.71 -0.2
484,741 - ABID97_RS02405 0.71 +0.6
484,741 - ABID97_RS02405 0.71 -1.2
484,905 + ABID97_RS02405 0.85 +0.2
484,906 - ABID97_RS02405 0.85 +0.8
484,960 - -0.6
484,960 - -0.1
485,292 + ABID97_RS02410 0.69 -0.9
485,292 + ABID97_RS02410 0.69 -0.4
485,292 + ABID97_RS02410 0.69 -0.6
485,292 + ABID97_RS02410 0.69 -0.2
485,292 + ABID97_RS02410 0.69 -0.5
485,292 + ABID97_RS02410 0.69 -0.1
485,293 - ABID97_RS02410 0.70 -0.5
485,357 - -0.9
485,357 - -0.4
485,358 + -0.5
485,358 + -0.9
485,358 + +0.0
485,358 + -0.3
485,358 + +0.2
485,358 + -0.4
485,358 + -0.2
485,358 + +1.1
485,358 + -0.6
485,358 + +0.5
485,358 + +0.2
485,358 + +0.7
485,359 - -0.1
485,359 - +0.4
485,359 - -0.5
485,359 - -0.7
485,359 - -0.4
485,359 - -0.1
485,359 - +0.1
485,417 - +0.4
485,417 - +1.8
485,452 - -0.5
485,471 + +0.5
485,472 - +0.3
485,496 + -0.7
485,574 + +0.5
485,574 + -0.2
485,574 + +0.6
485,574 + -0.5
485,575 - +0.1
485,575 - -1.0
485,838 + ABID97_RS02415 0.29 +0.0
485,838 + ABID97_RS02415 0.29 +0.1
485,838 + ABID97_RS02415 0.29 +0.1
485,839 - ABID97_RS02415 0.29 -0.1
485,839 - ABID97_RS02415 0.29 +0.0
485,839 - ABID97_RS02415 0.29 +1.1
485,839 - ABID97_RS02415 0.29 -0.2
485,839 - ABID97_RS02415 0.29 -0.4
485,839 - ABID97_RS02415 0.29 -0.8
485,839 - ABID97_RS02415 0.29 +0.2
485,839 - ABID97_RS02415 0.29 +0.1
485,844 + ABID97_RS02415 0.30 -0.1
485,845 - ABID97_RS02415 0.30 +0.9
485,859 + ABID97_RS02415 0.31 +0.1
485,859 + ABID97_RS02415 0.31 -0.3
485,860 - ABID97_RS02415 0.31 +0.1
485,860 - ABID97_RS02415 0.31 +2.1
485,868 + ABID97_RS02415 0.32 +0.2
485,868 + ABID97_RS02415 0.32 -0.5
485,869 - ABID97_RS02415 0.32 +0.5
485,869 - ABID97_RS02415 0.32 -1.5
485,869 - ABID97_RS02415 0.32 -0.2
485,935 - ABID97_RS02415 0.38 -0.1
485,935 - ABID97_RS02415 0.38 -0.6
485,935 - ABID97_RS02415 0.38 -1.1
485,946 + ABID97_RS02415 0.39 -0.0
486,087 + ABID97_RS02415 0.52 -0.1
486,264 + ABID97_RS02415 0.69 -0.4
486,438 + ABID97_RS02415 0.85 +0.3
486,439 - ABID97_RS02415 0.85 -0.6
486,505 + -0.2
486,506 - -1.4
486,689 + ABID97_RS02420 0.28 -2.4
486,689 + ABID97_RS02420 0.28 -0.5
486,689 + ABID97_RS02420 0.28 -4.9
486,690 - ABID97_RS02420 0.29 -3.3
486,690 - ABID97_RS02420 0.29 -3.5
486,690 - ABID97_RS02420 0.29 -0.5
486,690 - ABID97_RS02420 0.29 -2.9
486,809 + ABID97_RS02420 0.64 -3.5
486,810 - ABID97_RS02420 0.64 +1.2
486,810 - ABID97_RS02420 0.64 -3.3
486,810 - ABID97_RS02420 0.64 -2.3
486,986 - +0.4
486,986 - +1.4
486,986 - +0.4
487,199 + ABID97_RS02425 0.55 -0.4
487,200 - ABID97_RS02425 0.55 +0.3
487,200 - ABID97_RS02425 0.55 +0.4
487,370 - -0.1
487,528 + ABID97_RS02430 0.19 -1.0
487,540 + ABID97_RS02430 0.21 -0.3
487,540 + ABID97_RS02430 0.21 +0.2
487,540 + ABID97_RS02430 0.21 -0.0
487,540 + ABID97_RS02430 0.21 -0.0
487,541 - ABID97_RS02430 0.21 +1.8

Or see this region's nucleotide sequence