Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01960 and ABID97_RS01965 are separated by 105 nucleotides ABID97_RS01965 and ABID97_RS01970 are separated by 44 nucleotides
ABID97_RS01960: ABID97_RS01960 - alpha-ketoglutarate dehydrogenase, at 387,787 to 390,455
_RS01960
ABID97_RS01965: ABID97_RS01965 - Lrp/AsnC family transcriptional regulator, at 390,561 to 391,025
_RS01965
ABID97_RS01970: ABID97_RS01970 - PhoX family phosphatase, at 391,070 to 393,340
_RS01970
Position (kb) 390
391
392 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 389.746 kb on + strand, within ABID97_RS01960 at 389.747 kb on - strand, within ABID97_RS01960 at 389.768 kb on - strand, within ABID97_RS01960 at 389.833 kb on + strand, within ABID97_RS01960 at 389.834 kb on - strand, within ABID97_RS01960 at 389.845 kb on + strand, within ABID97_RS01960 at 389.948 kb on - strand, within ABID97_RS01960 at 389.948 kb on - strand, within ABID97_RS01960 at 389.959 kb on + strand, within ABID97_RS01960 at 390.086 kb on - strand, within ABID97_RS01960 at 390.086 kb on - strand, within ABID97_RS01960 at 390.239 kb on - strand at 390.486 kb on + strand at 390.487 kb on - strand at 390.487 kb on - strand at 390.589 kb on + strand at 390.715 kb on - strand, within ABID97_RS01965 at 390.852 kb on + strand, within ABID97_RS01965 at 390.876 kb on + strand, within ABID97_RS01965 at 390.876 kb on + strand, within ABID97_RS01965 at 390.876 kb on + strand, within ABID97_RS01965 at 390.996 kb on + strand at 390.996 kb on + strand at 390.997 kb on - strand at 390.997 kb on - strand at 390.997 kb on - strand at 390.997 kb on - strand at 391.443 kb on + strand, within ABID97_RS01970 at 391.444 kb on - strand, within ABID97_RS01970 at 391.585 kb on + strand, within ABID97_RS01970 at 391.587 kb on + strand, within ABID97_RS01970 at 391.587 kb on + strand, within ABID97_RS01970 at 391.587 kb on + strand, within ABID97_RS01970 at 391.587 kb on + strand, within ABID97_RS01970 at 391.588 kb on - strand, within ABID97_RS01970 at 391.588 kb on - strand, within ABID97_RS01970 at 391.704 kb on + strand, within ABID97_RS01970 at 391.704 kb on + strand, within ABID97_RS01970 at 391.704 kb on + strand, within ABID97_RS01970 at 391.705 kb on - strand, within ABID97_RS01970 at 391.705 kb on - strand, within ABID97_RS01970 at 391.705 kb on - strand, within ABID97_RS01970 at 391.705 kb on - strand, within ABID97_RS01970 at 391.705 kb on - strand, within ABID97_RS01970 at 391.705 kb on - strand, within ABID97_RS01970 at 391.705 kb on - strand, within ABID97_RS01970 at 391.776 kb on + strand, within ABID97_RS01970 at 391.896 kb on + strand, within ABID97_RS01970 at 391.896 kb on + strand, within ABID97_RS01970 at 391.896 kb on + strand, within ABID97_RS01970 at 391.896 kb on + strand, within ABID97_RS01970 at 391.897 kb on - strand, within ABID97_RS01970 at 391.897 kb on - strand, within ABID97_RS01970 at 392.004 kb on + strand, within ABID97_RS01970 at 392.004 kb on + strand, within ABID97_RS01970 at 392.004 kb on + strand, within ABID97_RS01970 at 392.004 kb on + strand, within ABID97_RS01970 at 392.004 kb on + strand, within ABID97_RS01970 at 392.005 kb on - strand, within ABID97_RS01970 at 392.005 kb on - strand, within ABID97_RS01970 at 392.005 kb on - strand, within ABID97_RS01970 at 392.005 kb on - strand, within ABID97_RS01970
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 389,746 + ABID97_RS01960 0.73 -2.2 389,747 - ABID97_RS01960 0.73 -2.9 389,768 - ABID97_RS01960 0.74 -2.1 389,833 + ABID97_RS01960 0.77 -2.8 389,834 - ABID97_RS01960 0.77 -3.0 389,845 + ABID97_RS01960 0.77 -6.2 389,948 - ABID97_RS01960 0.81 -3.3 389,948 - ABID97_RS01960 0.81 -4.2 389,959 + ABID97_RS01960 0.81 -5.6 390,086 - ABID97_RS01960 0.86 -5.2 390,086 - ABID97_RS01960 0.86 -1.4 390,239 - -3.9 390,486 + -2.9 390,487 - -3.7 390,487 - -3.3 390,589 + -3.0 390,715 - ABID97_RS01965 0.33 -3.6 390,852 + ABID97_RS01965 0.63 -4.7 390,876 + ABID97_RS01965 0.68 -4.9 390,876 + ABID97_RS01965 0.68 -4.0 390,876 + ABID97_RS01965 0.68 -5.0 390,996 + -5.2 390,996 + -2.3 390,997 - -3.5 390,997 - -4.2 390,997 - -2.0 390,997 - -4.6 391,443 + ABID97_RS01970 0.16 -0.5 391,444 - ABID97_RS01970 0.16 +1.1 391,585 + ABID97_RS01970 0.23 -0.9 391,587 + ABID97_RS01970 0.23 -0.1 391,587 + ABID97_RS01970 0.23 +0.1 391,587 + ABID97_RS01970 0.23 -0.8 391,587 + ABID97_RS01970 0.23 -0.8 391,588 - ABID97_RS01970 0.23 -0.4 391,588 - ABID97_RS01970 0.23 +0.4 391,704 + ABID97_RS01970 0.28 +1.9 391,704 + ABID97_RS01970 0.28 +2.0 391,704 + ABID97_RS01970 0.28 +0.0 391,705 - ABID97_RS01970 0.28 +0.1 391,705 - ABID97_RS01970 0.28 +0.4 391,705 - ABID97_RS01970 0.28 -0.0 391,705 - ABID97_RS01970 0.28 -0.6 391,705 - ABID97_RS01970 0.28 -0.2 391,705 - ABID97_RS01970 0.28 +1.2 391,705 - ABID97_RS01970 0.28 -0.1 391,776 + ABID97_RS01970 0.31 -0.3 391,896 + ABID97_RS01970 0.36 -0.1 391,896 + ABID97_RS01970 0.36 -0.2 391,896 + ABID97_RS01970 0.36 -0.0 391,896 + ABID97_RS01970 0.36 -0.5 391,897 - ABID97_RS01970 0.36 -0.2 391,897 - ABID97_RS01970 0.36 +0.0 392,004 + ABID97_RS01970 0.41 -0.2 392,004 + ABID97_RS01970 0.41 -1.1 392,004 + ABID97_RS01970 0.41 -1.6 392,004 + ABID97_RS01970 0.41 -0.9 392,004 + ABID97_RS01970 0.41 -0.0 392,005 - ABID97_RS01970 0.41 +0.4 392,005 - ABID97_RS01970 0.41 -0.2 392,005 - ABID97_RS01970 0.41 -0.2 392,005 - ABID97_RS01970 0.41 +0.3
Or see this region's nucleotide sequence