Strain Fitness in Variovorax sp. OAS795 around ABID97_RS01960

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS01955 and ABID97_RS01960 are separated by 69 nucleotidesABID97_RS01960 and ABID97_RS01965 are separated by 105 nucleotidesABID97_RS01965 and ABID97_RS01970 are separated by 44 nucleotides ABID97_RS01955: ABID97_RS01955 - FadR/GntR family transcriptional regulator, at 386,941 to 387,717 _RS01955 ABID97_RS01960: ABID97_RS01960 - alpha-ketoglutarate dehydrogenase, at 387,787 to 390,455 _RS01960 ABID97_RS01965: ABID97_RS01965 - Lrp/AsnC family transcriptional regulator, at 390,561 to 391,025 _RS01965 ABID97_RS01970: ABID97_RS01970 - PhoX family phosphatase, at 391,070 to 393,340 _RS01970 Position (kb) 387 388 389 390 391Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 386.921 kb on + strandat 387.207 kb on - strand, within ABID97_RS01955at 387.207 kb on - strand, within ABID97_RS01955at 387.207 kb on - strand, within ABID97_RS01955at 387.491 kb on + strand, within ABID97_RS01955at 387.491 kb on + strand, within ABID97_RS01955at 387.491 kb on + strand, within ABID97_RS01955at 387.491 kb on + strand, within ABID97_RS01955at 387.492 kb on - strand, within ABID97_RS01955at 387.748 kb on - strandat 387.748 kb on - strandat 387.748 kb on - strandat 387.865 kb on - strandat 387.902 kb on + strandat 387.903 kb on - strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.957 kb on - strandat 387.957 kb on - strandat 387.957 kb on - strandat 387.957 kb on - strandat 387.957 kb on - strandat 388.289 kb on + strand, within ABID97_RS01960at 388.289 kb on + strand, within ABID97_RS01960at 388.289 kb on + strand, within ABID97_RS01960at 388.290 kb on - strand, within ABID97_RS01960at 388.313 kb on + strand, within ABID97_RS01960at 388.313 kb on + strand, within ABID97_RS01960at 388.314 kb on - strand, within ABID97_RS01960at 388.314 kb on - strand, within ABID97_RS01960at 388.314 kb on - strand, within ABID97_RS01960at 388.316 kb on + strand, within ABID97_RS01960at 388.317 kb on - strand, within ABID97_RS01960at 388.317 kb on - strand, within ABID97_RS01960at 388.388 kb on + strand, within ABID97_RS01960at 388.388 kb on + strand, within ABID97_RS01960at 388.389 kb on - strand, within ABID97_RS01960at 388.400 kb on + strand, within ABID97_RS01960at 388.578 kb on - strand, within ABID97_RS01960at 388.580 kb on + strand, within ABID97_RS01960at 388.580 kb on + strand, within ABID97_RS01960at 388.580 kb on + strand, within ABID97_RS01960at 388.580 kb on + strand, within ABID97_RS01960at 388.580 kb on + strand, within ABID97_RS01960at 388.581 kb on - strand, within ABID97_RS01960at 388.581 kb on - strand, within ABID97_RS01960at 388.581 kb on - strand, within ABID97_RS01960at 388.581 kb on - strand, within ABID97_RS01960at 388.586 kb on + strand, within ABID97_RS01960at 388.586 kb on + strand, within ABID97_RS01960at 388.586 kb on + strand, within ABID97_RS01960at 388.587 kb on - strand, within ABID97_RS01960at 388.587 kb on - strand, within ABID97_RS01960at 388.587 kb on - strand, within ABID97_RS01960at 388.587 kb on - strand, within ABID97_RS01960at 388.619 kb on + strand, within ABID97_RS01960at 388.620 kb on - strand, within ABID97_RS01960at 388.620 kb on - strand, within ABID97_RS01960at 388.740 kb on - strand, within ABID97_RS01960at 388.740 kb on - strand, within ABID97_RS01960at 388.760 kb on + strand, within ABID97_RS01960at 388.760 kb on + strand, within ABID97_RS01960at 388.760 kb on + strand, within ABID97_RS01960at 388.761 kb on - strand, within ABID97_RS01960at 388.761 kb on - strand, within ABID97_RS01960at 388.761 kb on - strand, within ABID97_RS01960at 388.761 kb on - strand, within ABID97_RS01960at 389.026 kb on + strand, within ABID97_RS01960at 389.026 kb on + strand, within ABID97_RS01960at 389.026 kb on + strand, within ABID97_RS01960at 389.026 kb on + strand, within ABID97_RS01960at 389.027 kb on - strand, within ABID97_RS01960at 389.059 kb on + strand, within ABID97_RS01960at 389.059 kb on + strand, within ABID97_RS01960at 389.257 kb on + strand, within ABID97_RS01960at 389.746 kb on + strand, within ABID97_RS01960at 389.747 kb on - strand, within ABID97_RS01960at 389.768 kb on - strand, within ABID97_RS01960at 389.833 kb on + strand, within ABID97_RS01960at 389.834 kb on - strand, within ABID97_RS01960at 389.845 kb on + strand, within ABID97_RS01960at 389.948 kb on - strand, within ABID97_RS01960at 389.948 kb on - strand, within ABID97_RS01960at 389.959 kb on + strand, within ABID97_RS01960at 390.086 kb on - strand, within ABID97_RS01960at 390.086 kb on - strand, within ABID97_RS01960at 390.239 kb on - strandat 390.486 kb on + strandat 390.487 kb on - strandat 390.487 kb on - strandat 390.589 kb on + strandat 390.715 kb on - strand, within ABID97_RS01965at 390.852 kb on + strand, within ABID97_RS01965at 390.876 kb on + strand, within ABID97_RS01965at 390.876 kb on + strand, within ABID97_RS01965at 390.876 kb on + strand, within ABID97_RS01965at 390.996 kb on + strandat 390.996 kb on + strandat 390.997 kb on - strandat 390.997 kb on - strandat 390.997 kb on - strandat 390.997 kb on - strandat 391.443 kb on + strand, within ABID97_RS01970at 391.444 kb on - strand, within ABID97_RS01970

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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386,921 + +0.2
387,207 - ABID97_RS01955 0.34 +0.0
387,207 - ABID97_RS01955 0.34 -0.1
387,207 - ABID97_RS01955 0.34 +0.0
387,491 + ABID97_RS01955 0.71 -0.3
387,491 + ABID97_RS01955 0.71 +0.7
387,491 + ABID97_RS01955 0.71 -0.3
387,491 + ABID97_RS01955 0.71 +0.0
387,492 - ABID97_RS01955 0.71 +0.8
387,748 - -0.2
387,748 - -0.7
387,748 - -1.2
387,865 - -4.8
387,902 + -3.5
387,903 - -4.7
387,956 + -1.2
387,956 + -4.9
387,957 - -3.0
387,957 - -4.1
387,957 - -2.6
387,957 - -0.6
387,957 - -5.2
388,289 + ABID97_RS01960 0.19 -3.5
388,289 + ABID97_RS01960 0.19 -4.5
388,289 + ABID97_RS01960 0.19 -3.8
388,290 - ABID97_RS01960 0.19 -4.2
388,313 + ABID97_RS01960 0.20 -2.9
388,313 + ABID97_RS01960 0.20 -1.7
388,314 - ABID97_RS01960 0.20 -3.3
388,314 - ABID97_RS01960 0.20 -3.9
388,314 - ABID97_RS01960 0.20 -4.2
388,316 + ABID97_RS01960 0.20 -4.6
388,317 - ABID97_RS01960 0.20 -4.6
388,317 - ABID97_RS01960 0.20 -5.6
388,388 + ABID97_RS01960 0.23 -3.0
388,388 + ABID97_RS01960 0.23 -3.4
388,389 - ABID97_RS01960 0.23 -3.5
388,400 + ABID97_RS01960 0.23 -3.5
388,578 - ABID97_RS01960 0.30 -2.1
388,580 + ABID97_RS01960 0.30 -0.8
388,580 + ABID97_RS01960 0.30 -3.1
388,580 + ABID97_RS01960 0.30 -4.0
388,580 + ABID97_RS01960 0.30 -4.0
388,580 + ABID97_RS01960 0.30 -0.2
388,581 - ABID97_RS01960 0.30 -2.2
388,581 - ABID97_RS01960 0.30 -2.3
388,581 - ABID97_RS01960 0.30 -4.1
388,581 - ABID97_RS01960 0.30 -2.2
388,586 + ABID97_RS01960 0.30 -2.9
388,586 + ABID97_RS01960 0.30 -1.4
388,586 + ABID97_RS01960 0.30 -4.6
388,587 - ABID97_RS01960 0.30 -4.2
388,587 - ABID97_RS01960 0.30 +0.8
388,587 - ABID97_RS01960 0.30 +1.2
388,587 - ABID97_RS01960 0.30 +0.2
388,619 + ABID97_RS01960 0.31 -0.2
388,620 - ABID97_RS01960 0.31 -4.6
388,620 - ABID97_RS01960 0.31 -4.0
388,740 - ABID97_RS01960 0.36 -4.8
388,740 - ABID97_RS01960 0.36 -4.6
388,760 + ABID97_RS01960 0.36 -3.9
388,760 + ABID97_RS01960 0.36 -5.3
388,760 + ABID97_RS01960 0.36 -4.4
388,761 - ABID97_RS01960 0.36 -4.0
388,761 - ABID97_RS01960 0.36 -3.8
388,761 - ABID97_RS01960 0.36 -3.0
388,761 - ABID97_RS01960 0.36 -5.9
389,026 + ABID97_RS01960 0.46 -5.7
389,026 + ABID97_RS01960 0.46 -5.3
389,026 + ABID97_RS01960 0.46 -3.6
389,026 + ABID97_RS01960 0.46 -2.7
389,027 - ABID97_RS01960 0.46 -1.2
389,059 + ABID97_RS01960 0.48 -3.0
389,059 + ABID97_RS01960 0.48 -0.6
389,257 + ABID97_RS01960 0.55 +0.4
389,746 + ABID97_RS01960 0.73 -2.2
389,747 - ABID97_RS01960 0.73 -2.9
389,768 - ABID97_RS01960 0.74 -2.1
389,833 + ABID97_RS01960 0.77 -2.8
389,834 - ABID97_RS01960 0.77 -3.0
389,845 + ABID97_RS01960 0.77 -6.2
389,948 - ABID97_RS01960 0.81 -3.3
389,948 - ABID97_RS01960 0.81 -4.2
389,959 + ABID97_RS01960 0.81 -5.6
390,086 - ABID97_RS01960 0.86 -5.2
390,086 - ABID97_RS01960 0.86 -1.4
390,239 - -3.9
390,486 + -2.9
390,487 - -3.7
390,487 - -3.3
390,589 + -3.0
390,715 - ABID97_RS01965 0.33 -3.6
390,852 + ABID97_RS01965 0.63 -4.7
390,876 + ABID97_RS01965 0.68 -4.9
390,876 + ABID97_RS01965 0.68 -4.0
390,876 + ABID97_RS01965 0.68 -5.0
390,996 + -5.2
390,996 + -2.3
390,997 - -3.5
390,997 - -4.2
390,997 - -2.0
390,997 - -4.6
391,443 + ABID97_RS01970 0.16 -0.5
391,444 - ABID97_RS01970 0.16 +1.1

Or see this region's nucleotide sequence