Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00980

Experiment: L-Threonine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00975 and ABID97_RS00980 are separated by 10 nucleotidesABID97_RS00980 and ABID97_RS00985 are separated by 146 nucleotides ABID97_RS00975: ABID97_RS00975 - winged helix DNA-binding domain-containing protein, at 196,823 to 197,926 _RS00975 ABID97_RS00980: ABID97_RS00980 - pseudouridine synthase, at 197,937 to 198,761 _RS00980 ABID97_RS00985: ABID97_RS00985 - glycosyltransferase, at 198,908 to 200,047 _RS00985 Position (kb) 197 198 199Strain fitness (log2 ratio) -1 0 1at 197.787 kb on + strand, within ABID97_RS00975at 197.788 kb on - strand, within ABID97_RS00975at 197.788 kb on - strand, within ABID97_RS00975at 197.788 kb on - strand, within ABID97_RS00975at 198.284 kb on - strand, within ABID97_RS00980at 198.530 kb on - strand, within ABID97_RS00980at 199.058 kb on + strand, within ABID97_RS00985at 199.059 kb on - strand, within ABID97_RS00985at 199.070 kb on + strand, within ABID97_RS00985at 199.071 kb on - strand, within ABID97_RS00985at 199.071 kb on - strand, within ABID97_RS00985at 199.110 kb on - strand, within ABID97_RS00985

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine (C)
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197,787 + ABID97_RS00975 0.87 -0.0
197,788 - ABID97_RS00975 0.87 +0.2
197,788 - ABID97_RS00975 0.87 +0.3
197,788 - ABID97_RS00975 0.87 +0.4
198,284 - ABID97_RS00980 0.42 +0.1
198,530 - ABID97_RS00980 0.72 -0.8
199,058 + ABID97_RS00985 0.13 -0.2
199,059 - ABID97_RS00985 0.13 -0.1
199,070 + ABID97_RS00985 0.14 -0.6
199,071 - ABID97_RS00985 0.14 -0.0
199,071 - ABID97_RS00985 0.14 +0.1
199,110 - ABID97_RS00985 0.18 +1.1

Or see this region's nucleotide sequence