Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaA and rpmH are separated by 606 nucleotides rpmH and rnpA are separated by 16 nucleotides rnpA and yidD overlap by 37 nucleotides yidD and yidC are separated by 2 nucleotides
b3702: dnaA - chromosomal replication initiation protein (NCBI), at 3,880,349 to 3,881,752
dnaA
b3703: rpmH - 50S ribosomal protein L34 (NCBI), at 3,882,359 to 3,882,499
rpmH
b3704: rnpA - ribonuclease P (NCBI), at 3,882,516 to 3,882,875
rnpA
b4557: yidD - hypothetical protein (NCBI), at 3,882,839 to 3,883,096
yidD
b3705: yidC - inner membrane protein translocase component YidC (NCBI), at 3,883,099 to 3,884,745
yidC
Position (kb)
3882
3883 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3881.798 kb on - strand at 3881.847 kb on - strand at 3881.847 kb on - strand at 3881.884 kb on - strand at 3881.914 kb on + strand at 3881.932 kb on - strand at 3881.959 kb on + strand at 3881.972 kb on - strand at 3881.976 kb on + strand at 3882.000 kb on - strand at 3882.000 kb on - strand at 3882.009 kb on - strand at 3882.088 kb on + strand at 3882.097 kb on - strand at 3882.110 kb on + strand at 3882.110 kb on + strand at 3882.118 kb on - strand at 3882.118 kb on - strand at 3882.120 kb on - strand at 3882.163 kb on + strand at 3882.172 kb on - strand at 3882.876 kb on - strand, within yidD at 3882.876 kb on - strand, within yidD at 3882.883 kb on + strand, within yidD at 3882.901 kb on + strand, within yidD at 3882.901 kb on - strand, within yidD at 3882.902 kb on - strand, within yidD at 3882.941 kb on - strand, within yidD at 3882.960 kb on + strand, within yidD at 3882.978 kb on + strand, within yidD at 3883.034 kb on + strand, within yidD at 3883.034 kb on + strand, within yidD
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 3,881,798 - -1.2 3,881,847 - -0.0 3,881,847 - -0.7 3,881,884 - -1.0 3,881,914 + +1.5 3,881,932 - -0.5 3,881,959 + -0.0 3,881,972 - -3.1 3,881,976 + +0.3 3,882,000 - +0.6 3,882,000 - -0.4 3,882,009 - -0.5 3,882,088 + -1.1 3,882,097 - +0.1 3,882,110 + -0.4 3,882,110 + +1.7 3,882,118 - +0.3 3,882,118 - -1.0 3,882,120 - -0.0 3,882,163 + +0.4 3,882,172 - -0.1 3,882,876 - yidD b4557 0.14 -0.3 3,882,876 - yidD b4557 0.14 +0.7 3,882,883 + yidD b4557 0.17 +0.1 3,882,901 + yidD b4557 0.24 +1.7 3,882,901 - yidD b4557 0.24 -0.0 3,882,902 - yidD b4557 0.24 +0.2 3,882,941 - yidD b4557 0.40 +3.2 3,882,960 + yidD b4557 0.47 +1.2 3,882,978 + yidD b4557 0.54 -0.2 3,883,034 + yidD b4557 0.76 +0.2 3,883,034 + yidD b4557 0.76 +0.0
Or see this region's nucleotide sequence