Strain Fitness in Serratia liquefaciens MT49 around IAI46_24310

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24305 and IAI46_24310 are separated by 98 nucleotidesIAI46_24310 and IAI46_24315 are separated by 146 nucleotidesIAI46_24315 and IAI46_24320 are separated by 165 nucleotides IAI46_24305: IAI46_24305 - AsmA family protein, at 5,187,827 to 5,189,860 _24305 IAI46_24310: IAI46_24310 - cyclic-guanylate-specific phosphodiesterase, at 5,189,959 to 5,190,744 _24310 IAI46_24315: IAI46_24315 - 4-oxalocrotonate tautomerase family protein, at 5,190,891 to 5,191,094 _24315 IAI46_24320: IAI46_24320 - sugar kinase, at 5,191,260 to 5,192,192 _24320 Position (kb) 5189 5190 5191Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5188.963 kb on - strand, within IAI46_24305at 5188.963 kb on - strand, within IAI46_24305at 5189.001 kb on + strand, within IAI46_24305at 5189.001 kb on + strand, within IAI46_24305at 5189.002 kb on - strand, within IAI46_24305at 5189.077 kb on + strand, within IAI46_24305at 5189.078 kb on - strand, within IAI46_24305at 5189.078 kb on - strand, within IAI46_24305at 5189.084 kb on + strand, within IAI46_24305at 5189.085 kb on - strand, within IAI46_24305at 5189.085 kb on - strand, within IAI46_24305at 5189.150 kb on + strand, within IAI46_24305at 5189.202 kb on + strand, within IAI46_24305at 5189.202 kb on + strand, within IAI46_24305at 5189.203 kb on - strand, within IAI46_24305at 5189.203 kb on - strand, within IAI46_24305at 5189.203 kb on - strand, within IAI46_24305at 5189.203 kb on - strand, within IAI46_24305at 5189.203 kb on - strand, within IAI46_24305at 5189.203 kb on - strand, within IAI46_24305at 5189.203 kb on - strand, within IAI46_24305at 5189.203 kb on - strand, within IAI46_24305at 5189.232 kb on + strand, within IAI46_24305at 5189.232 kb on + strand, within IAI46_24305at 5189.232 kb on + strand, within IAI46_24305at 5189.372 kb on + strand, within IAI46_24305at 5189.372 kb on + strand, within IAI46_24305at 5189.372 kb on + strand, within IAI46_24305at 5189.373 kb on - strand, within IAI46_24305at 5189.434 kb on + strand, within IAI46_24305at 5189.447 kb on - strand, within IAI46_24305at 5189.500 kb on + strand, within IAI46_24305at 5189.575 kb on + strand, within IAI46_24305at 5189.575 kb on + strand, within IAI46_24305at 5189.575 kb on + strand, within IAI46_24305at 5189.575 kb on + strand, within IAI46_24305at 5189.575 kb on + strand, within IAI46_24305at 5189.576 kb on - strand, within IAI46_24305at 5189.576 kb on - strand, within IAI46_24305at 5189.576 kb on - strand, within IAI46_24305at 5189.576 kb on - strand, within IAI46_24305at 5189.610 kb on - strand, within IAI46_24305at 5189.614 kb on + strand, within IAI46_24305at 5189.614 kb on + strand, within IAI46_24305at 5189.629 kb on + strand, within IAI46_24305at 5189.629 kb on + strand, within IAI46_24305at 5189.630 kb on - strand, within IAI46_24305at 5189.672 kb on - strandat 5189.707 kb on + strandat 5189.708 kb on - strandat 5189.746 kb on + strandat 5189.747 kb on - strandat 5189.747 kb on - strandat 5189.860 kb on + strandat 5189.860 kb on + strandat 5189.861 kb on - strandat 5189.898 kb on - strandat 5189.917 kb on + strandat 5189.918 kb on - strandat 5190.029 kb on + strandat 5190.029 kb on + strandat 5190.029 kb on + strandat 5190.029 kb on + strandat 5190.029 kb on + strandat 5190.030 kb on - strandat 5190.030 kb on - strandat 5190.033 kb on - strandat 5190.033 kb on - strandat 5190.130 kb on + strand, within IAI46_24310at 5190.177 kb on + strand, within IAI46_24310at 5190.177 kb on + strand, within IAI46_24310at 5190.178 kb on - strand, within IAI46_24310at 5190.178 kb on - strand, within IAI46_24310at 5190.212 kb on + strand, within IAI46_24310at 5190.212 kb on + strand, within IAI46_24310at 5190.212 kb on + strand, within IAI46_24310at 5190.212 kb on + strand, within IAI46_24310at 5190.212 kb on + strand, within IAI46_24310at 5190.212 kb on + strand, within IAI46_24310at 5190.213 kb on - strand, within IAI46_24310at 5190.219 kb on - strand, within IAI46_24310at 5190.356 kb on + strand, within IAI46_24310at 5190.357 kb on - strand, within IAI46_24310at 5190.357 kb on - strand, within IAI46_24310at 5190.427 kb on - strand, within IAI46_24310at 5190.540 kb on - strand, within IAI46_24310at 5190.646 kb on - strand, within IAI46_24310at 5190.647 kb on + strand, within IAI46_24310at 5190.647 kb on + strand, within IAI46_24310at 5190.648 kb on - strand, within IAI46_24310at 5190.685 kb on + strandat 5190.685 kb on + strandat 5190.685 kb on + strandat 5190.686 kb on - strandat 5190.686 kb on - strandat 5190.686 kb on - strandat 5190.686 kb on - strandat 5190.686 kb on - strandat 5190.686 kb on - strandat 5190.686 kb on - strandat 5190.686 kb on - strandat 5190.686 kb on - strandat 5190.687 kb on + strandat 5190.687 kb on + strandat 5190.687 kb on + strandat 5190.687 kb on + strandat 5190.688 kb on - strandat 5190.688 kb on - strandat 5190.752 kb on - strandat 5190.832 kb on - strandat 5190.832 kb on - strandat 5190.852 kb on + strandat 5190.852 kb on + strandat 5190.862 kb on - strandat 5190.862 kb on - strandat 5190.897 kb on + strandat 5190.901 kb on + strandat 5190.902 kb on - strandat 5190.902 kb on - strandat 5191.030 kb on + strand, within IAI46_24315at 5191.031 kb on - strand, within IAI46_24315at 5191.031 kb on - strand, within IAI46_24315at 5191.092 kb on + strandat 5191.092 kb on + strandat 5191.093 kb on - strandat 5191.259 kb on + strandat 5191.259 kb on + strandat 5191.329 kb on - strandat 5191.354 kb on + strand, within IAI46_24320at 5191.354 kb on + strand, within IAI46_24320at 5191.358 kb on + strand, within IAI46_24320at 5191.358 kb on + strand, within IAI46_24320at 5191.358 kb on + strand, within IAI46_24320at 5191.359 kb on - strand, within IAI46_24320at 5191.359 kb on - strand, within IAI46_24320at 5191.359 kb on - strand, within IAI46_24320at 5191.366 kb on + strand, within IAI46_24320at 5191.367 kb on - strand, within IAI46_24320at 5191.367 kb on - strand, within IAI46_24320at 5191.367 kb on - strand, within IAI46_24320at 5191.368 kb on + strand, within IAI46_24320at 5191.368 kb on + strand, within IAI46_24320at 5191.368 kb on + strand, within IAI46_24320at 5191.368 kb on + strand, within IAI46_24320at 5191.368 kb on + strand, within IAI46_24320at 5191.368 kb on + strand, within IAI46_24320at 5191.369 kb on - strand, within IAI46_24320at 5191.369 kb on - strand, within IAI46_24320at 5191.369 kb on - strand, within IAI46_24320at 5191.369 kb on - strand, within IAI46_24320at 5191.369 kb on - strand, within IAI46_24320at 5191.369 kb on - strand, within IAI46_24320at 5191.369 kb on - strand, within IAI46_24320at 5191.410 kb on + strand, within IAI46_24320at 5191.410 kb on + strand, within IAI46_24320at 5191.410 kb on + strand, within IAI46_24320at 5191.410 kb on + strand, within IAI46_24320at 5191.411 kb on - strand, within IAI46_24320at 5191.482 kb on - strand, within IAI46_24320at 5191.482 kb on - strand, within IAI46_24320at 5191.524 kb on + strand, within IAI46_24320at 5191.524 kb on + strand, within IAI46_24320at 5191.525 kb on - strand, within IAI46_24320at 5191.525 kb on - strand, within IAI46_24320at 5191.525 kb on - strand, within IAI46_24320at 5191.525 kb on - strand, within IAI46_24320at 5191.564 kb on - strand, within IAI46_24320at 5191.566 kb on + strand, within IAI46_24320at 5191.650 kb on + strand, within IAI46_24320at 5191.650 kb on + strand, within IAI46_24320at 5191.651 kb on - strand, within IAI46_24320at 5191.654 kb on + strand, within IAI46_24320at 5191.654 kb on + strand, within IAI46_24320at 5191.655 kb on - strand, within IAI46_24320at 5191.655 kb on - strand, within IAI46_24320at 5191.655 kb on - strand, within IAI46_24320at 5191.655 kb on - strand, within IAI46_24320at 5191.655 kb on - strand, within IAI46_24320at 5191.656 kb on + strand, within IAI46_24320at 5191.657 kb on - strand, within IAI46_24320at 5191.661 kb on + strand, within IAI46_24320at 5191.662 kb on - strand, within IAI46_24320at 5191.717 kb on + strand, within IAI46_24320at 5191.718 kb on - strand, within IAI46_24320

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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5,188,963 - IAI46_24305 0.56 -0.2
5,188,963 - IAI46_24305 0.56 +0.4
5,189,001 + IAI46_24305 0.58 -0.1
5,189,001 + IAI46_24305 0.58 -0.7
5,189,002 - IAI46_24305 0.58 -0.8
5,189,077 + IAI46_24305 0.61 +0.2
5,189,078 - IAI46_24305 0.62 +0.5
5,189,078 - IAI46_24305 0.62 +0.6
5,189,084 + IAI46_24305 0.62 -0.6
5,189,085 - IAI46_24305 0.62 -0.3
5,189,085 - IAI46_24305 0.62 +0.9
5,189,150 + IAI46_24305 0.65 +0.3
5,189,202 + IAI46_24305 0.68 -0.1
5,189,202 + IAI46_24305 0.68 +1.2
5,189,203 - IAI46_24305 0.68 +2.5
5,189,203 - IAI46_24305 0.68 -0.3
5,189,203 - IAI46_24305 0.68 -0.5
5,189,203 - IAI46_24305 0.68 +1.2
5,189,203 - IAI46_24305 0.68 -1.3
5,189,203 - IAI46_24305 0.68 +1.3
5,189,203 - IAI46_24305 0.68 -0.5
5,189,203 - IAI46_24305 0.68 -0.0
5,189,232 + IAI46_24305 0.69 +0.1
5,189,232 + IAI46_24305 0.69 +0.1
5,189,232 + IAI46_24305 0.69 -0.6
5,189,372 + IAI46_24305 0.76 -0.9
5,189,372 + IAI46_24305 0.76 +1.1
5,189,372 + IAI46_24305 0.76 +0.2
5,189,373 - IAI46_24305 0.76 -0.0
5,189,434 + IAI46_24305 0.79 -0.6
5,189,447 - IAI46_24305 0.80 +0.0
5,189,500 + IAI46_24305 0.82 -0.4
5,189,575 + IAI46_24305 0.86 -1.0
5,189,575 + IAI46_24305 0.86 +0.3
5,189,575 + IAI46_24305 0.86 +0.3
5,189,575 + IAI46_24305 0.86 +0.0
5,189,575 + IAI46_24305 0.86 -0.7
5,189,576 - IAI46_24305 0.86 -0.3
5,189,576 - IAI46_24305 0.86 -0.2
5,189,576 - IAI46_24305 0.86 +0.2
5,189,576 - IAI46_24305 0.86 -0.5
5,189,610 - IAI46_24305 0.88 -0.4
5,189,614 + IAI46_24305 0.88 +0.3
5,189,614 + IAI46_24305 0.88 +0.4
5,189,629 + IAI46_24305 0.89 +0.0
5,189,629 + IAI46_24305 0.89 -0.3
5,189,630 - IAI46_24305 0.89 +0.1
5,189,672 - +0.5
5,189,707 + +0.7
5,189,708 - +0.1
5,189,746 + +0.9
5,189,747 - -0.1
5,189,747 - -0.3
5,189,860 + +0.2
5,189,860 + -0.1
5,189,861 - +0.1
5,189,898 - +0.2
5,189,917 + -0.8
5,189,918 - -0.5
5,190,029 + -0.8
5,190,029 + -1.0
5,190,029 + +0.1
5,190,029 + -0.7
5,190,029 + -0.8
5,190,030 - +0.8
5,190,030 - +0.7
5,190,033 - +0.5
5,190,033 - +0.9
5,190,130 + IAI46_24310 0.22 +0.7
5,190,177 + IAI46_24310 0.28 -1.1
5,190,177 + IAI46_24310 0.28 +0.4
5,190,178 - IAI46_24310 0.28 +0.0
5,190,178 - IAI46_24310 0.28 +0.4
5,190,212 + IAI46_24310 0.32 -1.2
5,190,212 + IAI46_24310 0.32 +0.5
5,190,212 + IAI46_24310 0.32 -1.0
5,190,212 + IAI46_24310 0.32 +0.3
5,190,212 + IAI46_24310 0.32 -0.7
5,190,212 + IAI46_24310 0.32 +0.6
5,190,213 - IAI46_24310 0.32 +1.1
5,190,219 - IAI46_24310 0.33 -2.0
5,190,356 + IAI46_24310 0.51 +0.2
5,190,357 - IAI46_24310 0.51 +0.2
5,190,357 - IAI46_24310 0.51 +1.9
5,190,427 - IAI46_24310 0.60 +0.1
5,190,540 - IAI46_24310 0.74 +0.9
5,190,646 - IAI46_24310 0.87 +0.9
5,190,647 + IAI46_24310 0.88 -0.1
5,190,647 + IAI46_24310 0.88 +0.4
5,190,648 - IAI46_24310 0.88 -0.3
5,190,685 + +1.0
5,190,685 + -1.3
5,190,685 + +0.9
5,190,686 - +0.6
5,190,686 - -0.0
5,190,686 - -0.1
5,190,686 - +0.7
5,190,686 - -0.3
5,190,686 - -0.3
5,190,686 - +0.4
5,190,686 - +0.0
5,190,686 - +0.2
5,190,687 + -0.1
5,190,687 + +1.1
5,190,687 + +0.8
5,190,687 + +0.1
5,190,688 - -0.6
5,190,688 - -0.2
5,190,752 - -0.2
5,190,832 - +0.0
5,190,832 - +1.0
5,190,852 + +0.6
5,190,852 + +0.4
5,190,862 - +0.3
5,190,862 - +0.4
5,190,897 + +0.1
5,190,901 + +0.7
5,190,902 - +0.0
5,190,902 - -0.6
5,191,030 + IAI46_24315 0.68 -0.5
5,191,031 - IAI46_24315 0.69 -0.1
5,191,031 - IAI46_24315 0.69 +1.5
5,191,092 + +0.7
5,191,092 + -0.5
5,191,093 - +2.1
5,191,259 + +0.5
5,191,259 + +0.5
5,191,329 - +3.1
5,191,354 + IAI46_24320 0.10 -0.0
5,191,354 + IAI46_24320 0.10 -0.4
5,191,358 + IAI46_24320 0.11 +0.4
5,191,358 + IAI46_24320 0.11 -0.1
5,191,358 + IAI46_24320 0.11 +0.1
5,191,359 - IAI46_24320 0.11 +0.2
5,191,359 - IAI46_24320 0.11 -0.3
5,191,359 - IAI46_24320 0.11 +0.4
5,191,366 + IAI46_24320 0.11 -0.2
5,191,367 - IAI46_24320 0.11 +0.2
5,191,367 - IAI46_24320 0.11 +0.5
5,191,367 - IAI46_24320 0.11 -0.1
5,191,368 + IAI46_24320 0.12 -0.6
5,191,368 + IAI46_24320 0.12 +0.2
5,191,368 + IAI46_24320 0.12 -0.0
5,191,368 + IAI46_24320 0.12 +0.4
5,191,368 + IAI46_24320 0.12 +0.3
5,191,368 + IAI46_24320 0.12 +0.6
5,191,369 - IAI46_24320 0.12 +0.2
5,191,369 - IAI46_24320 0.12 -1.0
5,191,369 - IAI46_24320 0.12 +0.1
5,191,369 - IAI46_24320 0.12 +0.8
5,191,369 - IAI46_24320 0.12 +0.0
5,191,369 - IAI46_24320 0.12 +1.0
5,191,369 - IAI46_24320 0.12 +1.0
5,191,410 + IAI46_24320 0.16 +0.5
5,191,410 + IAI46_24320 0.16 +0.7
5,191,410 + IAI46_24320 0.16 +0.2
5,191,410 + IAI46_24320 0.16 +0.3
5,191,411 - IAI46_24320 0.16 +0.3
5,191,482 - IAI46_24320 0.24 +0.4
5,191,482 - IAI46_24320 0.24 +0.1
5,191,524 + IAI46_24320 0.28 +1.7
5,191,524 + IAI46_24320 0.28 -0.3
5,191,525 - IAI46_24320 0.28 -1.0
5,191,525 - IAI46_24320 0.28 +0.3
5,191,525 - IAI46_24320 0.28 +1.2
5,191,525 - IAI46_24320 0.28 +0.2
5,191,564 - IAI46_24320 0.33 +0.3
5,191,566 + IAI46_24320 0.33 -0.4
5,191,650 + IAI46_24320 0.42 -0.2
5,191,650 + IAI46_24320 0.42 +0.3
5,191,651 - IAI46_24320 0.42 -0.9
5,191,654 + IAI46_24320 0.42 +0.2
5,191,654 + IAI46_24320 0.42 +0.1
5,191,655 - IAI46_24320 0.42 +0.4
5,191,655 - IAI46_24320 0.42 -0.8
5,191,655 - IAI46_24320 0.42 -0.2
5,191,655 - IAI46_24320 0.42 +0.0
5,191,655 - IAI46_24320 0.42 +0.3
5,191,656 + IAI46_24320 0.42 -0.1
5,191,657 - IAI46_24320 0.43 -0.3
5,191,661 + IAI46_24320 0.43 +0.0
5,191,662 - IAI46_24320 0.43 -0.0
5,191,717 + IAI46_24320 0.49 +0.0
5,191,718 - IAI46_24320 0.49 +0.8

Or see this region's nucleotide sequence