Experiment: dichromate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_23200 and IAI46_23205 are separated by 376 nucleotides IAI46_23205 and IAI46_23210 are separated by 51 nucleotides IAI46_23210 and IAI46_23215 are separated by 13 nucleotides IAI46_23215 and IAI46_23220 are separated by 81 nucleotides
IAI46_23200: IAI46_23200 - homoserine O-succinyltransferase, at 4,960,094 to 4,961,023
_23200
IAI46_23205: IAI46_23205 - 5S ribosomal RNA, at 4,961,400 to 4,961,515
_23205
IAI46_23210: IAI46_23210 - tRNA-Thr, at 4,961,567 to 4,961,642
_23210
IAI46_23215: IAI46_23215 - 5S ribosomal RNA, at 4,961,656 to 4,961,771
_23215
IAI46_23220: IAI46_23220 - 23S ribosomal RNA, at 4,961,853 to 4,964,790
_23220
Position (kb)
4961
4962 Strain fitness (log2 ratio)
-2
-1
0
1 at 4960.758 kb on + strand, within IAI46_23200 at 4960.758 kb on + strand, within IAI46_23200 at 4960.997 kb on + strand at 4960.998 kb on - strand at 4961.029 kb on - strand at 4961.063 kb on + strand at 4961.064 kb on - strand at 4961.157 kb on + strand at 4961.158 kb on - strand at 4961.211 kb on + strand at 4961.212 kb on - strand at 4961.212 kb on - strand at 4961.212 kb on - strand at 4961.341 kb on + strand at 4961.341 kb on + strand at 4961.341 kb on + strand at 4961.342 kb on - strand at 4961.342 kb on - strand at 4961.342 kb on - strand at 4961.378 kb on - strand at 4961.415 kb on - strand, within IAI46_23205 at 4961.527 kb on - strand at 4961.548 kb on - strand at 4961.562 kb on + strand at 4961.563 kb on - strand at 4961.563 kb on - strand at 4961.563 kb on - strand at 4961.671 kb on - strand, within IAI46_23215 at 4961.671 kb on - strand, within IAI46_23215
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic remove 4,960,758 + IAI46_23200 0.71 -0.0 4,960,758 + IAI46_23200 0.71 +0.5 4,960,997 + +1.3 4,960,998 - -0.1 4,961,029 - -0.2 4,961,063 + +0.1 4,961,064 - +0.7 4,961,157 + +0.3 4,961,158 - +0.3 4,961,211 + -1.2 4,961,212 - +0.4 4,961,212 - +1.3 4,961,212 - +1.4 4,961,341 + +0.6 4,961,341 + -0.8 4,961,341 + -0.1 4,961,342 - -0.7 4,961,342 - -0.0 4,961,342 - -0.4 4,961,378 - -2.0 4,961,415 - IAI46_23205 0.13 -0.4 4,961,527 - +0.0 4,961,548 - -0.9 4,961,562 + -0.2 4,961,563 - -0.1 4,961,563 - +0.3 4,961,563 - +0.5 4,961,671 - IAI46_23215 0.13 -0.4 4,961,671 - IAI46_23215 0.13 -0.2
Or see this region's nucleotide sequence