Experiment: dichromate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_22675 and IAI46_22680 are separated by 26 nucleotides IAI46_22680 and IAI46_22685 are separated by 288 nucleotides
IAI46_22675: IAI46_22675 - hemagglutinin repeat-containing protein, at 4,815,518 to 4,824,916
_22675
IAI46_22680: IAI46_22680 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 4,824,943 to 4,826,616
_22680
IAI46_22685: IAI46_22685 - metalloprotease TldD, at 4,826,905 to 4,828,350
_22685
Position (kb)
4824
4825
4826
4827 Strain fitness (log2 ratio)
-1
0
1
2 at 4823.971 kb on + strand, within IAI46_22675 at 4823.971 kb on + strand, within IAI46_22675 at 4823.971 kb on + strand, within IAI46_22675 at 4823.972 kb on - strand, within IAI46_22675 at 4823.972 kb on - strand, within IAI46_22675 at 4824.031 kb on + strand at 4824.031 kb on + strand at 4824.032 kb on - strand at 4824.032 kb on - strand at 4824.035 kb on - strand at 4824.070 kb on + strand at 4824.150 kb on + strand at 4824.150 kb on + strand at 4824.150 kb on + strand at 4824.151 kb on - strand at 4824.151 kb on - strand at 4824.172 kb on + strand at 4824.230 kb on - strand at 4824.705 kb on + strand at 4824.705 kb on + strand at 4824.705 kb on + strand at 4824.705 kb on + strand at 4824.722 kb on - strand at 4824.746 kb on - strand at 4824.746 kb on - strand at 4824.801 kb on - strand at 4824.821 kb on + strand at 4824.862 kb on + strand at 4824.863 kb on - strand at 4824.865 kb on - strand at 4824.887 kb on - strand at 4824.907 kb on + strand at 4824.908 kb on - strand at 4824.908 kb on - strand at 4824.939 kb on - strand at 4824.965 kb on + strand at 4824.968 kb on + strand at 4824.969 kb on - strand at 4825.125 kb on - strand, within IAI46_22680 at 4825.125 kb on - strand, within IAI46_22680 at 4825.155 kb on + strand, within IAI46_22680 at 4825.155 kb on + strand, within IAI46_22680 at 4825.156 kb on - strand, within IAI46_22680 at 4825.166 kb on + strand, within IAI46_22680 at 4825.232 kb on + strand, within IAI46_22680 at 4825.232 kb on + strand, within IAI46_22680 at 4825.233 kb on - strand, within IAI46_22680 at 4825.233 kb on - strand, within IAI46_22680 at 4825.253 kb on - strand, within IAI46_22680 at 4825.253 kb on - strand, within IAI46_22680 at 4825.292 kb on + strand, within IAI46_22680 at 4825.292 kb on + strand, within IAI46_22680 at 4825.292 kb on + strand, within IAI46_22680 at 4825.293 kb on - strand, within IAI46_22680 at 4825.293 kb on - strand, within IAI46_22680 at 4825.293 kb on - strand, within IAI46_22680 at 4825.294 kb on + strand, within IAI46_22680 at 4825.295 kb on - strand, within IAI46_22680 at 4825.295 kb on - strand, within IAI46_22680 at 4825.295 kb on - strand, within IAI46_22680 at 4825.295 kb on - strand, within IAI46_22680 at 4825.295 kb on - strand, within IAI46_22680 at 4825.295 kb on - strand, within IAI46_22680 at 4825.334 kb on + strand, within IAI46_22680 at 4825.334 kb on + strand, within IAI46_22680 at 4825.334 kb on + strand, within IAI46_22680 at 4825.335 kb on - strand, within IAI46_22680 at 4825.361 kb on + strand, within IAI46_22680 at 4825.362 kb on - strand, within IAI46_22680 at 4825.362 kb on - strand, within IAI46_22680 at 4825.362 kb on - strand, within IAI46_22680 at 4825.364 kb on + strand, within IAI46_22680 at 4825.365 kb on - strand, within IAI46_22680 at 4825.365 kb on - strand, within IAI46_22680 at 4825.365 kb on - strand, within IAI46_22680 at 4825.463 kb on + strand, within IAI46_22680 at 4825.512 kb on + strand, within IAI46_22680 at 4825.724 kb on + strand, within IAI46_22680 at 4825.739 kb on + strand, within IAI46_22680 at 4825.739 kb on + strand, within IAI46_22680 at 4825.739 kb on + strand, within IAI46_22680 at 4825.740 kb on - strand, within IAI46_22680 at 4825.740 kb on - strand, within IAI46_22680 at 4825.740 kb on - strand, within IAI46_22680 at 4825.740 kb on - strand, within IAI46_22680 at 4825.746 kb on - strand, within IAI46_22680 at 4825.746 kb on - strand, within IAI46_22680 at 4825.746 kb on - strand, within IAI46_22680 at 4825.766 kb on + strand, within IAI46_22680 at 4826.021 kb on - strand, within IAI46_22680 at 4826.021 kb on - strand, within IAI46_22680 at 4826.021 kb on - strand, within IAI46_22680 at 4826.092 kb on - strand, within IAI46_22680 at 4826.092 kb on - strand, within IAI46_22680 at 4826.092 kb on - strand, within IAI46_22680 at 4826.238 kb on + strand, within IAI46_22680 at 4826.238 kb on + strand, within IAI46_22680 at 4826.239 kb on - strand, within IAI46_22680 at 4826.239 kb on - strand, within IAI46_22680 at 4826.240 kb on + strand, within IAI46_22680 at 4826.240 kb on + strand, within IAI46_22680 at 4826.240 kb on + strand, within IAI46_22680 at 4826.240 kb on + strand, within IAI46_22680 at 4826.241 kb on - strand, within IAI46_22680 at 4826.254 kb on - strand, within IAI46_22680 at 4826.256 kb on - strand, within IAI46_22680 at 4826.256 kb on - strand, within IAI46_22680 at 4826.319 kb on - strand, within IAI46_22680 at 4826.334 kb on + strand, within IAI46_22680 at 4826.335 kb on - strand, within IAI46_22680 at 4826.391 kb on + strand, within IAI46_22680 at 4826.391 kb on + strand, within IAI46_22680 at 4826.454 kb on + strand at 4826.454 kb on + strand at 4826.538 kb on + strand at 4826.539 kb on - strand at 4826.651 kb on - strand at 4826.670 kb on + strand at 4826.688 kb on + strand at 4826.704 kb on + strand at 4826.705 kb on - strand at 4826.763 kb on - strand at 4826.768 kb on + strand at 4826.782 kb on - strand at 4826.819 kb on - strand at 4826.907 kb on - strand at 4826.992 kb on + strand at 4826.992 kb on + strand at 4826.992 kb on + strand at 4826.992 kb on + strand at 4826.992 kb on + strand at 4826.992 kb on + strand at 4826.992 kb on + strand at 4826.993 kb on - strand at 4827.007 kb on - strand at 4827.076 kb on - strand, within IAI46_22685 at 4827.120 kb on - strand, within IAI46_22685 at 4827.120 kb on - strand, within IAI46_22685 at 4827.191 kb on + strand, within IAI46_22685 at 4827.191 kb on + strand, within IAI46_22685 at 4827.192 kb on - strand, within IAI46_22685 at 4827.238 kb on - strand, within IAI46_22685 at 4827.251 kb on + strand, within IAI46_22685 at 4827.251 kb on + strand, within IAI46_22685 at 4827.251 kb on + strand, within IAI46_22685 at 4827.252 kb on - strand, within IAI46_22685 at 4827.252 kb on - strand, within IAI46_22685 at 4827.252 kb on - strand, within IAI46_22685 at 4827.255 kb on + strand, within IAI46_22685 at 4827.255 kb on + strand, within IAI46_22685 at 4827.256 kb on - strand, within IAI46_22685 at 4827.256 kb on - strand, within IAI46_22685 at 4827.256 kb on - strand, within IAI46_22685 at 4827.287 kb on + strand, within IAI46_22685 at 4827.287 kb on + strand, within IAI46_22685 at 4827.287 kb on + strand, within IAI46_22685 at 4827.287 kb on + strand, within IAI46_22685 at 4827.288 kb on - strand, within IAI46_22685 at 4827.357 kb on - strand, within IAI46_22685 at 4827.389 kb on + strand, within IAI46_22685 at 4827.390 kb on + strand, within IAI46_22685 at 4827.390 kb on + strand, within IAI46_22685 at 4827.392 kb on + strand, within IAI46_22685 at 4827.392 kb on + strand, within IAI46_22685 at 4827.392 kb on + strand, within IAI46_22685 at 4827.393 kb on - strand, within IAI46_22685 at 4827.450 kb on + strand, within IAI46_22685 at 4827.464 kb on - strand, within IAI46_22685 at 4827.574 kb on + strand, within IAI46_22685 at 4827.575 kb on - strand, within IAI46_22685
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic remove 4,823,971 + IAI46_22675 0.90 +0.4 4,823,971 + IAI46_22675 0.90 -0.9 4,823,971 + IAI46_22675 0.90 +0.3 4,823,972 - IAI46_22675 0.90 -0.1 4,823,972 - IAI46_22675 0.90 -0.3 4,824,031 + +1.4 4,824,031 + +0.9 4,824,032 - +1.4 4,824,032 - +0.4 4,824,035 - +0.4 4,824,070 + +0.2 4,824,150 + -1.0 4,824,150 + -0.5 4,824,150 + -0.2 4,824,151 - +0.2 4,824,151 - -0.1 4,824,172 + +0.6 4,824,230 - +0.5 4,824,705 + +0.7 4,824,705 + +0.7 4,824,705 + +1.1 4,824,705 + -0.4 4,824,722 - +0.6 4,824,746 - -0.7 4,824,746 - -0.2 4,824,801 - +0.2 4,824,821 + +0.1 4,824,862 + -0.1 4,824,863 - -0.1 4,824,865 - +1.0 4,824,887 - +0.0 4,824,907 + +1.0 4,824,908 - +1.3 4,824,908 - +0.5 4,824,939 - +0.5 4,824,965 + +0.2 4,824,968 + +0.9 4,824,969 - -0.8 4,825,125 - IAI46_22680 0.11 +0.2 4,825,125 - IAI46_22680 0.11 -1.1 4,825,155 + IAI46_22680 0.13 +0.2 4,825,155 + IAI46_22680 0.13 -0.2 4,825,156 - IAI46_22680 0.13 +0.2 4,825,166 + IAI46_22680 0.13 -0.0 4,825,232 + IAI46_22680 0.17 -0.4 4,825,232 + IAI46_22680 0.17 +0.2 4,825,233 - IAI46_22680 0.17 +0.0 4,825,233 - IAI46_22680 0.17 -0.2 4,825,253 - IAI46_22680 0.19 +0.7 4,825,253 - IAI46_22680 0.19 +0.7 4,825,292 + IAI46_22680 0.21 -0.1 4,825,292 + IAI46_22680 0.21 -0.4 4,825,292 + IAI46_22680 0.21 +1.2 4,825,293 - IAI46_22680 0.21 +0.1 4,825,293 - IAI46_22680 0.21 +0.5 4,825,293 - IAI46_22680 0.21 -0.3 4,825,294 + IAI46_22680 0.21 -0.3 4,825,295 - IAI46_22680 0.21 -0.7 4,825,295 - IAI46_22680 0.21 +0.4 4,825,295 - IAI46_22680 0.21 +0.3 4,825,295 - IAI46_22680 0.21 +2.3 4,825,295 - IAI46_22680 0.21 +0.2 4,825,295 - IAI46_22680 0.21 +0.2 4,825,334 + IAI46_22680 0.23 +0.1 4,825,334 + IAI46_22680 0.23 -0.4 4,825,334 + IAI46_22680 0.23 +0.6 4,825,335 - IAI46_22680 0.23 +0.0 4,825,361 + IAI46_22680 0.25 -0.5 4,825,362 - IAI46_22680 0.25 +0.1 4,825,362 - IAI46_22680 0.25 +0.4 4,825,362 - IAI46_22680 0.25 +0.6 4,825,364 + IAI46_22680 0.25 -1.4 4,825,365 - IAI46_22680 0.25 -0.3 4,825,365 - IAI46_22680 0.25 +0.7 4,825,365 - IAI46_22680 0.25 +0.3 4,825,463 + IAI46_22680 0.31 -1.4 4,825,512 + IAI46_22680 0.34 +0.1 4,825,724 + IAI46_22680 0.47 +0.3 4,825,739 + IAI46_22680 0.48 +0.2 4,825,739 + IAI46_22680 0.48 +0.1 4,825,739 + IAI46_22680 0.48 -0.4 4,825,740 - IAI46_22680 0.48 -0.1 4,825,740 - IAI46_22680 0.48 +1.2 4,825,740 - IAI46_22680 0.48 -0.5 4,825,740 - IAI46_22680 0.48 -0.1 4,825,746 - IAI46_22680 0.48 +0.1 4,825,746 - IAI46_22680 0.48 -0.1 4,825,746 - IAI46_22680 0.48 +1.0 4,825,766 + IAI46_22680 0.49 +1.4 4,826,021 - IAI46_22680 0.64 -1.0 4,826,021 - IAI46_22680 0.64 -0.9 4,826,021 - IAI46_22680 0.64 +0.3 4,826,092 - IAI46_22680 0.69 +0.4 4,826,092 - IAI46_22680 0.69 -0.1 4,826,092 - IAI46_22680 0.69 -0.6 4,826,238 + IAI46_22680 0.77 -0.1 4,826,238 + IAI46_22680 0.77 +0.7 4,826,239 - IAI46_22680 0.77 -0.2 4,826,239 - IAI46_22680 0.77 -1.6 4,826,240 + IAI46_22680 0.77 -0.3 4,826,240 + IAI46_22680 0.77 -0.3 4,826,240 + IAI46_22680 0.77 -1.6 4,826,240 + IAI46_22680 0.77 +0.1 4,826,241 - IAI46_22680 0.78 +0.4 4,826,254 - IAI46_22680 0.78 +0.1 4,826,256 - IAI46_22680 0.78 +0.4 4,826,256 - IAI46_22680 0.78 +0.6 4,826,319 - IAI46_22680 0.82 +0.1 4,826,334 + IAI46_22680 0.83 +0.7 4,826,335 - IAI46_22680 0.83 -0.8 4,826,391 + IAI46_22680 0.86 -0.6 4,826,391 + IAI46_22680 0.86 +1.0 4,826,454 + +0.2 4,826,454 + -0.4 4,826,538 + +0.2 4,826,539 - +0.0 4,826,651 - +0.8 4,826,670 + +0.5 4,826,688 + +0.6 4,826,704 + +0.1 4,826,705 - -0.1 4,826,763 - +2.1 4,826,768 + -1.3 4,826,782 - -0.4 4,826,819 - -0.3 4,826,907 - +0.7 4,826,992 + +0.3 4,826,992 + +0.5 4,826,992 + +0.1 4,826,992 + +1.4 4,826,992 + +1.9 4,826,992 + +0.2 4,826,992 + -1.3 4,826,993 - -0.9 4,827,007 - -0.1 4,827,076 - IAI46_22685 0.12 -0.4 4,827,120 - IAI46_22685 0.15 +1.2 4,827,120 - IAI46_22685 0.15 -0.2 4,827,191 + IAI46_22685 0.20 -0.4 4,827,191 + IAI46_22685 0.20 -0.8 4,827,192 - IAI46_22685 0.20 -0.4 4,827,238 - IAI46_22685 0.23 +0.7 4,827,251 + IAI46_22685 0.24 -0.5 4,827,251 + IAI46_22685 0.24 -0.0 4,827,251 + IAI46_22685 0.24 -0.2 4,827,252 - IAI46_22685 0.24 +1.2 4,827,252 - IAI46_22685 0.24 +0.9 4,827,252 - IAI46_22685 0.24 -1.6 4,827,255 + IAI46_22685 0.24 +0.1 4,827,255 + IAI46_22685 0.24 +0.0 4,827,256 - IAI46_22685 0.24 +0.2 4,827,256 - IAI46_22685 0.24 +0.2 4,827,256 - IAI46_22685 0.24 -0.3 4,827,287 + IAI46_22685 0.26 -0.2 4,827,287 + IAI46_22685 0.26 -0.3 4,827,287 + IAI46_22685 0.26 +1.4 4,827,287 + IAI46_22685 0.26 +0.7 4,827,288 - IAI46_22685 0.26 -0.4 4,827,357 - IAI46_22685 0.31 -0.4 4,827,389 + IAI46_22685 0.33 -0.4 4,827,390 + IAI46_22685 0.34 +0.2 4,827,390 + IAI46_22685 0.34 +0.1 4,827,392 + IAI46_22685 0.34 +0.4 4,827,392 + IAI46_22685 0.34 -0.1 4,827,392 + IAI46_22685 0.34 -1.6 4,827,393 - IAI46_22685 0.34 +0.0 4,827,450 + IAI46_22685 0.38 -0.2 4,827,464 - IAI46_22685 0.39 -0.5 4,827,574 + IAI46_22685 0.46 +0.7 4,827,575 - IAI46_22685 0.46 -0.0
Or see this region's nucleotide sequence