Strain Fitness in Serratia liquefaciens MT49 around IAI46_22680

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22675 and IAI46_22680 are separated by 26 nucleotidesIAI46_22680 and IAI46_22685 are separated by 288 nucleotides IAI46_22675: IAI46_22675 - hemagglutinin repeat-containing protein, at 4,815,518 to 4,824,916 _22675 IAI46_22680: IAI46_22680 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 4,824,943 to 4,826,616 _22680 IAI46_22685: IAI46_22685 - metalloprotease TldD, at 4,826,905 to 4,828,350 _22685 Position (kb) 4824 4825 4826 4827Strain fitness (log2 ratio) -1 0 1 2at 4823.971 kb on + strand, within IAI46_22675at 4823.971 kb on + strand, within IAI46_22675at 4823.971 kb on + strand, within IAI46_22675at 4823.972 kb on - strand, within IAI46_22675at 4823.972 kb on - strand, within IAI46_22675at 4824.031 kb on + strandat 4824.031 kb on + strandat 4824.032 kb on - strandat 4824.032 kb on - strandat 4824.035 kb on - strandat 4824.070 kb on + strandat 4824.150 kb on + strandat 4824.150 kb on + strandat 4824.150 kb on + strandat 4824.151 kb on - strandat 4824.151 kb on - strandat 4824.172 kb on + strandat 4824.230 kb on - strandat 4824.705 kb on + strandat 4824.705 kb on + strandat 4824.705 kb on + strandat 4824.705 kb on + strandat 4824.722 kb on - strandat 4824.746 kb on - strandat 4824.746 kb on - strandat 4824.801 kb on - strandat 4824.821 kb on + strandat 4824.862 kb on + strandat 4824.863 kb on - strandat 4824.865 kb on - strandat 4824.887 kb on - strandat 4824.907 kb on + strandat 4824.908 kb on - strandat 4824.908 kb on - strandat 4824.939 kb on - strandat 4824.965 kb on + strandat 4824.968 kb on + strandat 4824.969 kb on - strandat 4825.125 kb on - strand, within IAI46_22680at 4825.125 kb on - strand, within IAI46_22680at 4825.155 kb on + strand, within IAI46_22680at 4825.155 kb on + strand, within IAI46_22680at 4825.156 kb on - strand, within IAI46_22680at 4825.166 kb on + strand, within IAI46_22680at 4825.232 kb on + strand, within IAI46_22680at 4825.232 kb on + strand, within IAI46_22680at 4825.233 kb on - strand, within IAI46_22680at 4825.233 kb on - strand, within IAI46_22680at 4825.253 kb on - strand, within IAI46_22680at 4825.253 kb on - strand, within IAI46_22680at 4825.292 kb on + strand, within IAI46_22680at 4825.292 kb on + strand, within IAI46_22680at 4825.292 kb on + strand, within IAI46_22680at 4825.293 kb on - strand, within IAI46_22680at 4825.293 kb on - strand, within IAI46_22680at 4825.293 kb on - strand, within IAI46_22680at 4825.294 kb on + strand, within IAI46_22680at 4825.295 kb on - strand, within IAI46_22680at 4825.295 kb on - strand, within IAI46_22680at 4825.295 kb on - strand, within IAI46_22680at 4825.295 kb on - strand, within IAI46_22680at 4825.295 kb on - strand, within IAI46_22680at 4825.295 kb on - strand, within IAI46_22680at 4825.334 kb on + strand, within IAI46_22680at 4825.334 kb on + strand, within IAI46_22680at 4825.334 kb on + strand, within IAI46_22680at 4825.335 kb on - strand, within IAI46_22680at 4825.361 kb on + strand, within IAI46_22680at 4825.362 kb on - strand, within IAI46_22680at 4825.362 kb on - strand, within IAI46_22680at 4825.362 kb on - strand, within IAI46_22680at 4825.364 kb on + strand, within IAI46_22680at 4825.365 kb on - strand, within IAI46_22680at 4825.365 kb on - strand, within IAI46_22680at 4825.365 kb on - strand, within IAI46_22680at 4825.463 kb on + strand, within IAI46_22680at 4825.512 kb on + strand, within IAI46_22680at 4825.724 kb on + strand, within IAI46_22680at 4825.739 kb on + strand, within IAI46_22680at 4825.739 kb on + strand, within IAI46_22680at 4825.739 kb on + strand, within IAI46_22680at 4825.740 kb on - strand, within IAI46_22680at 4825.740 kb on - strand, within IAI46_22680at 4825.740 kb on - strand, within IAI46_22680at 4825.740 kb on - strand, within IAI46_22680at 4825.746 kb on - strand, within IAI46_22680at 4825.746 kb on - strand, within IAI46_22680at 4825.746 kb on - strand, within IAI46_22680at 4825.766 kb on + strand, within IAI46_22680at 4826.021 kb on - strand, within IAI46_22680at 4826.021 kb on - strand, within IAI46_22680at 4826.021 kb on - strand, within IAI46_22680at 4826.092 kb on - strand, within IAI46_22680at 4826.092 kb on - strand, within IAI46_22680at 4826.092 kb on - strand, within IAI46_22680at 4826.238 kb on + strand, within IAI46_22680at 4826.238 kb on + strand, within IAI46_22680at 4826.239 kb on - strand, within IAI46_22680at 4826.239 kb on - strand, within IAI46_22680at 4826.240 kb on + strand, within IAI46_22680at 4826.240 kb on + strand, within IAI46_22680at 4826.240 kb on + strand, within IAI46_22680at 4826.240 kb on + strand, within IAI46_22680at 4826.241 kb on - strand, within IAI46_22680at 4826.254 kb on - strand, within IAI46_22680at 4826.256 kb on - strand, within IAI46_22680at 4826.256 kb on - strand, within IAI46_22680at 4826.319 kb on - strand, within IAI46_22680at 4826.334 kb on + strand, within IAI46_22680at 4826.335 kb on - strand, within IAI46_22680at 4826.391 kb on + strand, within IAI46_22680at 4826.391 kb on + strand, within IAI46_22680at 4826.454 kb on + strandat 4826.454 kb on + strandat 4826.538 kb on + strandat 4826.539 kb on - strandat 4826.651 kb on - strandat 4826.670 kb on + strandat 4826.688 kb on + strandat 4826.704 kb on + strandat 4826.705 kb on - strandat 4826.763 kb on - strandat 4826.768 kb on + strandat 4826.782 kb on - strandat 4826.819 kb on - strandat 4826.907 kb on - strandat 4826.992 kb on + strandat 4826.992 kb on + strandat 4826.992 kb on + strandat 4826.992 kb on + strandat 4826.992 kb on + strandat 4826.992 kb on + strandat 4826.992 kb on + strandat 4826.993 kb on - strandat 4827.007 kb on - strandat 4827.076 kb on - strand, within IAI46_22685at 4827.120 kb on - strand, within IAI46_22685at 4827.120 kb on - strand, within IAI46_22685at 4827.191 kb on + strand, within IAI46_22685at 4827.191 kb on + strand, within IAI46_22685at 4827.192 kb on - strand, within IAI46_22685at 4827.238 kb on - strand, within IAI46_22685at 4827.251 kb on + strand, within IAI46_22685at 4827.251 kb on + strand, within IAI46_22685at 4827.251 kb on + strand, within IAI46_22685at 4827.252 kb on - strand, within IAI46_22685at 4827.252 kb on - strand, within IAI46_22685at 4827.252 kb on - strand, within IAI46_22685at 4827.255 kb on + strand, within IAI46_22685at 4827.255 kb on + strand, within IAI46_22685at 4827.256 kb on - strand, within IAI46_22685at 4827.256 kb on - strand, within IAI46_22685at 4827.256 kb on - strand, within IAI46_22685at 4827.287 kb on + strand, within IAI46_22685at 4827.287 kb on + strand, within IAI46_22685at 4827.287 kb on + strand, within IAI46_22685at 4827.287 kb on + strand, within IAI46_22685at 4827.288 kb on - strand, within IAI46_22685at 4827.357 kb on - strand, within IAI46_22685at 4827.389 kb on + strand, within IAI46_22685at 4827.390 kb on + strand, within IAI46_22685at 4827.390 kb on + strand, within IAI46_22685at 4827.392 kb on + strand, within IAI46_22685at 4827.392 kb on + strand, within IAI46_22685at 4827.392 kb on + strand, within IAI46_22685at 4827.393 kb on - strand, within IAI46_22685at 4827.450 kb on + strand, within IAI46_22685at 4827.464 kb on - strand, within IAI46_22685at 4827.574 kb on + strand, within IAI46_22685at 4827.575 kb on - strand, within IAI46_22685

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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4,823,971 + IAI46_22675 0.90 +0.4
4,823,971 + IAI46_22675 0.90 -0.9
4,823,971 + IAI46_22675 0.90 +0.3
4,823,972 - IAI46_22675 0.90 -0.1
4,823,972 - IAI46_22675 0.90 -0.3
4,824,031 + +1.4
4,824,031 + +0.9
4,824,032 - +1.4
4,824,032 - +0.4
4,824,035 - +0.4
4,824,070 + +0.2
4,824,150 + -1.0
4,824,150 + -0.5
4,824,150 + -0.2
4,824,151 - +0.2
4,824,151 - -0.1
4,824,172 + +0.6
4,824,230 - +0.5
4,824,705 + +0.7
4,824,705 + +0.7
4,824,705 + +1.1
4,824,705 + -0.4
4,824,722 - +0.6
4,824,746 - -0.7
4,824,746 - -0.2
4,824,801 - +0.2
4,824,821 + +0.1
4,824,862 + -0.1
4,824,863 - -0.1
4,824,865 - +1.0
4,824,887 - +0.0
4,824,907 + +1.0
4,824,908 - +1.3
4,824,908 - +0.5
4,824,939 - +0.5
4,824,965 + +0.2
4,824,968 + +0.9
4,824,969 - -0.8
4,825,125 - IAI46_22680 0.11 +0.2
4,825,125 - IAI46_22680 0.11 -1.1
4,825,155 + IAI46_22680 0.13 +0.2
4,825,155 + IAI46_22680 0.13 -0.2
4,825,156 - IAI46_22680 0.13 +0.2
4,825,166 + IAI46_22680 0.13 -0.0
4,825,232 + IAI46_22680 0.17 -0.4
4,825,232 + IAI46_22680 0.17 +0.2
4,825,233 - IAI46_22680 0.17 +0.0
4,825,233 - IAI46_22680 0.17 -0.2
4,825,253 - IAI46_22680 0.19 +0.7
4,825,253 - IAI46_22680 0.19 +0.7
4,825,292 + IAI46_22680 0.21 -0.1
4,825,292 + IAI46_22680 0.21 -0.4
4,825,292 + IAI46_22680 0.21 +1.2
4,825,293 - IAI46_22680 0.21 +0.1
4,825,293 - IAI46_22680 0.21 +0.5
4,825,293 - IAI46_22680 0.21 -0.3
4,825,294 + IAI46_22680 0.21 -0.3
4,825,295 - IAI46_22680 0.21 -0.7
4,825,295 - IAI46_22680 0.21 +0.4
4,825,295 - IAI46_22680 0.21 +0.3
4,825,295 - IAI46_22680 0.21 +2.3
4,825,295 - IAI46_22680 0.21 +0.2
4,825,295 - IAI46_22680 0.21 +0.2
4,825,334 + IAI46_22680 0.23 +0.1
4,825,334 + IAI46_22680 0.23 -0.4
4,825,334 + IAI46_22680 0.23 +0.6
4,825,335 - IAI46_22680 0.23 +0.0
4,825,361 + IAI46_22680 0.25 -0.5
4,825,362 - IAI46_22680 0.25 +0.1
4,825,362 - IAI46_22680 0.25 +0.4
4,825,362 - IAI46_22680 0.25 +0.6
4,825,364 + IAI46_22680 0.25 -1.4
4,825,365 - IAI46_22680 0.25 -0.3
4,825,365 - IAI46_22680 0.25 +0.7
4,825,365 - IAI46_22680 0.25 +0.3
4,825,463 + IAI46_22680 0.31 -1.4
4,825,512 + IAI46_22680 0.34 +0.1
4,825,724 + IAI46_22680 0.47 +0.3
4,825,739 + IAI46_22680 0.48 +0.2
4,825,739 + IAI46_22680 0.48 +0.1
4,825,739 + IAI46_22680 0.48 -0.4
4,825,740 - IAI46_22680 0.48 -0.1
4,825,740 - IAI46_22680 0.48 +1.2
4,825,740 - IAI46_22680 0.48 -0.5
4,825,740 - IAI46_22680 0.48 -0.1
4,825,746 - IAI46_22680 0.48 +0.1
4,825,746 - IAI46_22680 0.48 -0.1
4,825,746 - IAI46_22680 0.48 +1.0
4,825,766 + IAI46_22680 0.49 +1.4
4,826,021 - IAI46_22680 0.64 -1.0
4,826,021 - IAI46_22680 0.64 -0.9
4,826,021 - IAI46_22680 0.64 +0.3
4,826,092 - IAI46_22680 0.69 +0.4
4,826,092 - IAI46_22680 0.69 -0.1
4,826,092 - IAI46_22680 0.69 -0.6
4,826,238 + IAI46_22680 0.77 -0.1
4,826,238 + IAI46_22680 0.77 +0.7
4,826,239 - IAI46_22680 0.77 -0.2
4,826,239 - IAI46_22680 0.77 -1.6
4,826,240 + IAI46_22680 0.77 -0.3
4,826,240 + IAI46_22680 0.77 -0.3
4,826,240 + IAI46_22680 0.77 -1.6
4,826,240 + IAI46_22680 0.77 +0.1
4,826,241 - IAI46_22680 0.78 +0.4
4,826,254 - IAI46_22680 0.78 +0.1
4,826,256 - IAI46_22680 0.78 +0.4
4,826,256 - IAI46_22680 0.78 +0.6
4,826,319 - IAI46_22680 0.82 +0.1
4,826,334 + IAI46_22680 0.83 +0.7
4,826,335 - IAI46_22680 0.83 -0.8
4,826,391 + IAI46_22680 0.86 -0.6
4,826,391 + IAI46_22680 0.86 +1.0
4,826,454 + +0.2
4,826,454 + -0.4
4,826,538 + +0.2
4,826,539 - +0.0
4,826,651 - +0.8
4,826,670 + +0.5
4,826,688 + +0.6
4,826,704 + +0.1
4,826,705 - -0.1
4,826,763 - +2.1
4,826,768 + -1.3
4,826,782 - -0.4
4,826,819 - -0.3
4,826,907 - +0.7
4,826,992 + +0.3
4,826,992 + +0.5
4,826,992 + +0.1
4,826,992 + +1.4
4,826,992 + +1.9
4,826,992 + +0.2
4,826,992 + -1.3
4,826,993 - -0.9
4,827,007 - -0.1
4,827,076 - IAI46_22685 0.12 -0.4
4,827,120 - IAI46_22685 0.15 +1.2
4,827,120 - IAI46_22685 0.15 -0.2
4,827,191 + IAI46_22685 0.20 -0.4
4,827,191 + IAI46_22685 0.20 -0.8
4,827,192 - IAI46_22685 0.20 -0.4
4,827,238 - IAI46_22685 0.23 +0.7
4,827,251 + IAI46_22685 0.24 -0.5
4,827,251 + IAI46_22685 0.24 -0.0
4,827,251 + IAI46_22685 0.24 -0.2
4,827,252 - IAI46_22685 0.24 +1.2
4,827,252 - IAI46_22685 0.24 +0.9
4,827,252 - IAI46_22685 0.24 -1.6
4,827,255 + IAI46_22685 0.24 +0.1
4,827,255 + IAI46_22685 0.24 +0.0
4,827,256 - IAI46_22685 0.24 +0.2
4,827,256 - IAI46_22685 0.24 +0.2
4,827,256 - IAI46_22685 0.24 -0.3
4,827,287 + IAI46_22685 0.26 -0.2
4,827,287 + IAI46_22685 0.26 -0.3
4,827,287 + IAI46_22685 0.26 +1.4
4,827,287 + IAI46_22685 0.26 +0.7
4,827,288 - IAI46_22685 0.26 -0.4
4,827,357 - IAI46_22685 0.31 -0.4
4,827,389 + IAI46_22685 0.33 -0.4
4,827,390 + IAI46_22685 0.34 +0.2
4,827,390 + IAI46_22685 0.34 +0.1
4,827,392 + IAI46_22685 0.34 +0.4
4,827,392 + IAI46_22685 0.34 -0.1
4,827,392 + IAI46_22685 0.34 -1.6
4,827,393 - IAI46_22685 0.34 +0.0
4,827,450 + IAI46_22685 0.38 -0.2
4,827,464 - IAI46_22685 0.39 -0.5
4,827,574 + IAI46_22685 0.46 +0.7
4,827,575 - IAI46_22685 0.46 -0.0

Or see this region's nucleotide sequence