Strain Fitness in Serratia liquefaciens MT49 around IAI46_20075

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20070 and IAI46_20075 are separated by 187 nucleotidesIAI46_20075 and IAI46_20080 overlap by 8 nucleotidesIAI46_20080 and IAI46_20085 are separated by 60 nucleotides IAI46_20070: IAI46_20070 - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 4,234,266 to 4,234,829 _20070 IAI46_20075: IAI46_20075 - methionine ABC transporter ATP-binding protein MetN, at 4,235,017 to 4,236,048 _20075 IAI46_20080: IAI46_20080 - methionine ABC transporter permease MetI, at 4,236,041 to 4,236,694 _20080 IAI46_20085: IAI46_20085 - MetQ/NlpA family lipoprotein, at 4,236,755 to 4,237,570 _20085 Position (kb) 4235 4236 4237Strain fitness (log2 ratio) -2 -1 0 1 2at 4234.190 kb on + strandat 4234.190 kb on + strandat 4234.190 kb on + strandat 4234.221 kb on + strandat 4234.221 kb on + strandat 4234.221 kb on + strandat 4234.248 kb on - strandat 4234.248 kb on - strandat 4234.248 kb on - strandat 4234.248 kb on - strandat 4234.248 kb on - strandat 4234.865 kb on - strandat 4234.949 kb on + strandat 4234.952 kb on - strandat 4234.952 kb on - strandat 4234.979 kb on + strandat 4234.980 kb on - strandat 4235.017 kb on - strandat 4235.032 kb on - strandat 4235.124 kb on + strand, within IAI46_20075at 4235.152 kb on - strand, within IAI46_20075at 4235.574 kb on + strand, within IAI46_20075at 4235.901 kb on + strand, within IAI46_20075at 4235.901 kb on + strand, within IAI46_20075at 4235.902 kb on - strand, within IAI46_20075at 4235.924 kb on - strand, within IAI46_20075at 4236.021 kb on - strandat 4236.026 kb on + strandat 4236.026 kb on + strandat 4236.040 kb on + strandat 4236.040 kb on + strandat 4236.155 kb on + strand, within IAI46_20080at 4236.155 kb on + strand, within IAI46_20080at 4236.155 kb on + strand, within IAI46_20080at 4236.155 kb on + strand, within IAI46_20080at 4236.156 kb on - strand, within IAI46_20080at 4236.156 kb on - strand, within IAI46_20080at 4236.190 kb on + strand, within IAI46_20080at 4236.190 kb on + strand, within IAI46_20080at 4236.191 kb on - strand, within IAI46_20080at 4236.195 kb on + strand, within IAI46_20080at 4236.197 kb on + strand, within IAI46_20080at 4236.198 kb on - strand, within IAI46_20080at 4236.198 kb on - strand, within IAI46_20080at 4236.247 kb on + strand, within IAI46_20080at 4236.358 kb on + strand, within IAI46_20080at 4236.364 kb on - strand, within IAI46_20080at 4236.451 kb on - strand, within IAI46_20080at 4236.496 kb on + strand, within IAI46_20080at 4236.496 kb on + strand, within IAI46_20080at 4236.540 kb on + strand, within IAI46_20080at 4236.570 kb on - strand, within IAI46_20080at 4236.575 kb on + strand, within IAI46_20080at 4236.575 kb on + strand, within IAI46_20080at 4236.575 kb on + strand, within IAI46_20080at 4236.575 kb on + strand, within IAI46_20080at 4236.581 kb on + strand, within IAI46_20080at 4236.581 kb on + strand, within IAI46_20080at 4236.581 kb on + strand, within IAI46_20080at 4236.582 kb on - strand, within IAI46_20080at 4236.583 kb on + strand, within IAI46_20080at 4236.583 kb on + strand, within IAI46_20080at 4236.583 kb on + strand, within IAI46_20080at 4236.583 kb on + strand, within IAI46_20080at 4236.583 kb on + strand, within IAI46_20080at 4236.583 kb on + strand, within IAI46_20080at 4236.583 kb on + strand, within IAI46_20080at 4236.583 kb on + strand, within IAI46_20080at 4236.584 kb on - strand, within IAI46_20080at 4236.584 kb on - strand, within IAI46_20080at 4236.584 kb on - strand, within IAI46_20080at 4236.584 kb on - strand, within IAI46_20080at 4236.584 kb on - strand, within IAI46_20080at 4236.585 kb on + strand, within IAI46_20080at 4236.585 kb on + strand, within IAI46_20080at 4236.585 kb on + strand, within IAI46_20080at 4236.585 kb on + strand, within IAI46_20080at 4236.586 kb on - strand, within IAI46_20080at 4236.586 kb on - strand, within IAI46_20080at 4236.591 kb on - strand, within IAI46_20080at 4236.591 kb on - strand, within IAI46_20080at 4236.591 kb on - strand, within IAI46_20080at 4236.591 kb on - strand, within IAI46_20080at 4236.591 kb on - strand, within IAI46_20080at 4236.591 kb on - strand, within IAI46_20080at 4236.593 kb on - strand, within IAI46_20080at 4236.604 kb on - strand, within IAI46_20080at 4236.615 kb on + strand, within IAI46_20080at 4236.615 kb on + strand, within IAI46_20080at 4236.615 kb on + strand, within IAI46_20080at 4236.618 kb on + strand, within IAI46_20080at 4236.618 kb on + strand, within IAI46_20080at 4236.618 kb on + strand, within IAI46_20080at 4236.618 kb on + strand, within IAI46_20080at 4236.618 kb on + strand, within IAI46_20080at 4236.618 kb on + strand, within IAI46_20080at 4236.619 kb on - strand, within IAI46_20080at 4236.619 kb on - strand, within IAI46_20080at 4236.621 kb on + strand, within IAI46_20080at 4236.621 kb on + strand, within IAI46_20080at 4236.622 kb on - strand, within IAI46_20080at 4236.624 kb on + strand, within IAI46_20080at 4236.625 kb on - strand, within IAI46_20080at 4236.625 kb on - strand, within IAI46_20080at 4236.641 kb on + strandat 4236.642 kb on - strandat 4236.642 kb on - strandat 4236.688 kb on + strandat 4236.699 kb on + strandat 4236.700 kb on - strandat 4236.716 kb on + strandat 4236.716 kb on + strandat 4236.717 kb on - strandat 4236.741 kb on - strandat 4236.754 kb on + strandat 4236.755 kb on - strandat 4236.755 kb on - strandat 4236.755 kb on - strandat 4236.959 kb on + strand, within IAI46_20085at 4236.959 kb on + strand, within IAI46_20085at 4236.959 kb on + strand, within IAI46_20085at 4236.986 kb on - strand, within IAI46_20085at 4237.025 kb on + strand, within IAI46_20085

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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4,234,190 + -1.6
4,234,190 + +0.2
4,234,190 + +1.0
4,234,221 + +0.8
4,234,221 + +0.7
4,234,221 + +0.4
4,234,248 - +2.0
4,234,248 - +1.3
4,234,248 - +0.9
4,234,248 - +1.3
4,234,248 - +0.5
4,234,865 - -0.1
4,234,949 + -0.5
4,234,952 - -0.7
4,234,952 - +0.4
4,234,979 + +0.4
4,234,980 - -1.7
4,235,017 - -0.2
4,235,032 - +0.3
4,235,124 + IAI46_20075 0.10 +0.5
4,235,152 - IAI46_20075 0.13 -0.3
4,235,574 + IAI46_20075 0.54 -0.6
4,235,901 + IAI46_20075 0.86 -1.3
4,235,901 + IAI46_20075 0.86 +0.8
4,235,902 - IAI46_20075 0.86 +1.0
4,235,924 - IAI46_20075 0.88 -0.2
4,236,021 - -0.3
4,236,026 + +0.1
4,236,026 + -0.2
4,236,040 + -0.6
4,236,040 + +0.2
4,236,155 + IAI46_20080 0.17 +0.3
4,236,155 + IAI46_20080 0.17 -0.3
4,236,155 + IAI46_20080 0.17 +0.4
4,236,155 + IAI46_20080 0.17 +0.6
4,236,156 - IAI46_20080 0.18 -0.2
4,236,156 - IAI46_20080 0.18 -0.1
4,236,190 + IAI46_20080 0.23 -0.3
4,236,190 + IAI46_20080 0.23 +0.4
4,236,191 - IAI46_20080 0.23 +0.0
4,236,195 + IAI46_20080 0.24 -1.0
4,236,197 + IAI46_20080 0.24 -0.6
4,236,198 - IAI46_20080 0.24 -0.0
4,236,198 - IAI46_20080 0.24 +0.6
4,236,247 + IAI46_20080 0.31 +0.5
4,236,358 + IAI46_20080 0.48 -2.6
4,236,364 - IAI46_20080 0.49 -1.7
4,236,451 - IAI46_20080 0.63 -0.7
4,236,496 + IAI46_20080 0.70 -0.3
4,236,496 + IAI46_20080 0.70 -0.5
4,236,540 + IAI46_20080 0.76 -0.6
4,236,570 - IAI46_20080 0.81 -1.4
4,236,575 + IAI46_20080 0.82 -0.1
4,236,575 + IAI46_20080 0.82 -0.5
4,236,575 + IAI46_20080 0.82 -0.4
4,236,575 + IAI46_20080 0.82 -0.3
4,236,581 + IAI46_20080 0.83 +0.5
4,236,581 + IAI46_20080 0.83 -0.8
4,236,581 + IAI46_20080 0.83 +0.7
4,236,582 - IAI46_20080 0.83 +1.0
4,236,583 + IAI46_20080 0.83 -0.3
4,236,583 + IAI46_20080 0.83 -0.5
4,236,583 + IAI46_20080 0.83 +0.4
4,236,583 + IAI46_20080 0.83 -0.5
4,236,583 + IAI46_20080 0.83 +1.0
4,236,583 + IAI46_20080 0.83 +0.4
4,236,583 + IAI46_20080 0.83 -1.5
4,236,583 + IAI46_20080 0.83 +0.1
4,236,584 - IAI46_20080 0.83 -1.2
4,236,584 - IAI46_20080 0.83 -0.1
4,236,584 - IAI46_20080 0.83 -0.6
4,236,584 - IAI46_20080 0.83 -0.5
4,236,584 - IAI46_20080 0.83 +0.6
4,236,585 + IAI46_20080 0.83 +0.1
4,236,585 + IAI46_20080 0.83 -0.7
4,236,585 + IAI46_20080 0.83 +0.2
4,236,585 + IAI46_20080 0.83 -0.8
4,236,586 - IAI46_20080 0.83 +0.8
4,236,586 - IAI46_20080 0.83 +0.3
4,236,591 - IAI46_20080 0.84 -0.7
4,236,591 - IAI46_20080 0.84 -0.1
4,236,591 - IAI46_20080 0.84 -1.7
4,236,591 - IAI46_20080 0.84 -2.1
4,236,591 - IAI46_20080 0.84 -0.1
4,236,591 - IAI46_20080 0.84 +0.0
4,236,593 - IAI46_20080 0.84 +0.5
4,236,604 - IAI46_20080 0.86 +1.1
4,236,615 + IAI46_20080 0.88 -0.8
4,236,615 + IAI46_20080 0.88 +0.2
4,236,615 + IAI46_20080 0.88 -0.6
4,236,618 + IAI46_20080 0.88 -0.1
4,236,618 + IAI46_20080 0.88 -1.0
4,236,618 + IAI46_20080 0.88 -0.1
4,236,618 + IAI46_20080 0.88 -0.2
4,236,618 + IAI46_20080 0.88 -1.6
4,236,618 + IAI46_20080 0.88 -0.5
4,236,619 - IAI46_20080 0.88 -0.0
4,236,619 - IAI46_20080 0.88 +1.0
4,236,621 + IAI46_20080 0.89 -0.9
4,236,621 + IAI46_20080 0.89 -0.1
4,236,622 - IAI46_20080 0.89 -0.4
4,236,624 + IAI46_20080 0.89 +0.9
4,236,625 - IAI46_20080 0.89 -1.1
4,236,625 - IAI46_20080 0.89 +0.9
4,236,641 + +0.8
4,236,642 - +0.0
4,236,642 - +0.5
4,236,688 + -0.6
4,236,699 + -1.2
4,236,700 - +0.8
4,236,716 + +0.2
4,236,716 + -0.0
4,236,717 - -2.0
4,236,741 - -1.0
4,236,754 + +0.1
4,236,755 - -0.7
4,236,755 - +0.2
4,236,755 - -0.2
4,236,959 + IAI46_20085 0.25 -0.8
4,236,959 + IAI46_20085 0.25 -0.6
4,236,959 + IAI46_20085 0.25 -0.9
4,236,986 - IAI46_20085 0.28 +1.1
4,237,025 + IAI46_20085 0.33 -1.4

Or see this region's nucleotide sequence