Strain Fitness in Serratia liquefaciens MT49 around IAI46_18815

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18805 and IAI46_18810 are separated by 352 nucleotidesIAI46_18810 and IAI46_18815 are separated by 60 nucleotidesIAI46_18815 and IAI46_18820 are separated by 200 nucleotidesIAI46_18820 and IAI46_18825 are separated by 29 nucleotidesIAI46_18825 and IAI46_18830 are separated by 106 nucleotides IAI46_18805: IAI46_18805 - YncE family protein, at 3,961,010 to 3,962,095 _18805 IAI46_18810: IAI46_18810 - TOBE domain-containing protein, at 3,962,448 to 3,962,876 _18810 IAI46_18815: IAI46_18815 - LysE family translocator, at 3,962,937 to 3,963,554 _18815 IAI46_18820: IAI46_18820 - Lrp/AsnC family transcriptional regulator, at 3,963,755 to 3,964,210 _18820 IAI46_18825: IAI46_18825 - DUF2767 family protein, at 3,964,240 to 3,964,446 _18825 IAI46_18830: IAI46_18830 - FAD-dependent oxidoreductase, at 3,964,553 to 3,965,761 _18830 Position (kb) 3962 3963 3964Strain fitness (log2 ratio) -1 0 1at 3962.114 kb on - strandat 3962.115 kb on + strandat 3962.115 kb on + strandat 3962.116 kb on - strandat 3962.116 kb on - strandat 3962.116 kb on - strandat 3962.185 kb on - strandat 3962.185 kb on - strandat 3962.367 kb on - strandat 3962.409 kb on + strandat 3962.409 kb on + strandat 3962.410 kb on - strandat 3962.509 kb on + strand, within IAI46_18810at 3962.559 kb on - strand, within IAI46_18810at 3962.569 kb on + strand, within IAI46_18810at 3962.569 kb on + strand, within IAI46_18810at 3962.639 kb on + strand, within IAI46_18810at 3962.745 kb on - strand, within IAI46_18810at 3962.875 kb on - strandat 3962.875 kb on - strandat 3962.944 kb on - strandat 3963.070 kb on + strand, within IAI46_18815at 3963.187 kb on - strand, within IAI46_18815at 3963.187 kb on - strand, within IAI46_18815at 3963.353 kb on + strand, within IAI46_18815at 3963.407 kb on + strand, within IAI46_18815at 3963.430 kb on - strand, within IAI46_18815at 3963.433 kb on - strand, within IAI46_18815at 3963.478 kb on + strand, within IAI46_18815at 3963.478 kb on + strand, within IAI46_18815at 3963.479 kb on - strand, within IAI46_18815at 3963.501 kb on - strandat 3963.501 kb on - strandat 3963.558 kb on + strandat 3963.558 kb on + strandat 3963.559 kb on - strandat 3963.725 kb on + strandat 3963.903 kb on - strand, within IAI46_18820at 3963.938 kb on - strand, within IAI46_18820at 3964.209 kb on - strandat 3964.239 kb on + strandat 3964.239 kb on + strandat 3964.240 kb on - strandat 3964.273 kb on + strand, within IAI46_18825at 3964.273 kb on + strand, within IAI46_18825at 3964.283 kb on + strand, within IAI46_18825at 3964.283 kb on + strand, within IAI46_18825at 3964.296 kb on - strand, within IAI46_18825at 3964.365 kb on + strand, within IAI46_18825at 3964.444 kb on + strandat 3964.444 kb on + strandat 3964.444 kb on + strandat 3964.444 kb on + strandat 3964.445 kb on - strandat 3964.469 kb on + strandat 3964.545 kb on + strandat 3964.546 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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3,962,114 - +0.5
3,962,115 + +0.7
3,962,115 + +0.1
3,962,116 - +0.5
3,962,116 - +0.8
3,962,116 - +0.4
3,962,185 - +0.1
3,962,185 - +0.2
3,962,367 - +0.2
3,962,409 + +0.0
3,962,409 + +1.3
3,962,410 - +0.8
3,962,509 + IAI46_18810 0.14 +0.3
3,962,559 - IAI46_18810 0.26 +1.5
3,962,569 + IAI46_18810 0.28 -0.0
3,962,569 + IAI46_18810 0.28 +0.8
3,962,639 + IAI46_18810 0.45 +0.6
3,962,745 - IAI46_18810 0.69 +0.5
3,962,875 - +0.7
3,962,875 - +0.1
3,962,944 - -0.2
3,963,070 + IAI46_18815 0.22 +1.1
3,963,187 - IAI46_18815 0.40 -0.6
3,963,187 - IAI46_18815 0.40 +0.4
3,963,353 + IAI46_18815 0.67 -0.5
3,963,407 + IAI46_18815 0.76 -0.6
3,963,430 - IAI46_18815 0.80 -0.2
3,963,433 - IAI46_18815 0.80 +0.7
3,963,478 + IAI46_18815 0.88 +0.7
3,963,478 + IAI46_18815 0.88 -1.2
3,963,479 - IAI46_18815 0.88 -0.1
3,963,501 - -0.1
3,963,501 - +0.7
3,963,558 + -0.6
3,963,558 + -0.8
3,963,559 - -0.0
3,963,725 + +0.8
3,963,903 - IAI46_18820 0.32 -0.2
3,963,938 - IAI46_18820 0.40 +0.2
3,964,209 - +0.2
3,964,239 + +0.4
3,964,239 + +0.2
3,964,240 - +0.2
3,964,273 + IAI46_18825 0.16 +0.2
3,964,273 + IAI46_18825 0.16 -0.2
3,964,283 + IAI46_18825 0.21 +0.6
3,964,283 + IAI46_18825 0.21 +0.1
3,964,296 - IAI46_18825 0.27 +0.2
3,964,365 + IAI46_18825 0.60 +0.0
3,964,444 + +0.3
3,964,444 + +0.9
3,964,444 + -0.6
3,964,444 + +1.2
3,964,445 - +0.1
3,964,469 + -1.3
3,964,545 + -0.0
3,964,546 - +0.6

Or see this region's nucleotide sequence