Strain Fitness in Serratia liquefaciens MT49 around IAI46_17815

Experiment: dichromate 20 uM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_17810 and IAI46_17815 are separated by 21 nucleotidesIAI46_17815 and IAI46_17820 are separated by 232 nucleotidesIAI46_17820 and IAI46_17825 are separated by 0 nucleotides IAI46_17810: IAI46_17810 - amidophosphoribosyltransferase, at 3,752,964 to 3,754,481 _17810 IAI46_17815: IAI46_17815 - colicin V production protein, at 3,754,503 to 3,755,003 _17815 IAI46_17820: IAI46_17820 - cell division protein DedD, at 3,755,236 to 3,756,000 _17820 IAI46_17825: IAI46_17825 - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 3,756,001 to 3,757,266 _17825 Position (kb) 3754 3755 3756Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3753.521 kb on - strand, within IAI46_17810at 3753.536 kb on + strand, within IAI46_17810at 3753.557 kb on + strand, within IAI46_17810at 3753.664 kb on + strand, within IAI46_17810at 3753.713 kb on - strand, within IAI46_17810at 3753.787 kb on + strand, within IAI46_17810at 3753.787 kb on + strand, within IAI46_17810at 3753.787 kb on + strand, within IAI46_17810at 3753.787 kb on + strand, within IAI46_17810at 3753.787 kb on + strand, within IAI46_17810at 3753.788 kb on - strand, within IAI46_17810at 3753.867 kb on - strand, within IAI46_17810at 3753.867 kb on - strand, within IAI46_17810at 3753.867 kb on - strand, within IAI46_17810at 3753.867 kb on - strand, within IAI46_17810at 3753.867 kb on - strand, within IAI46_17810at 3753.867 kb on - strand, within IAI46_17810at 3753.868 kb on + strand, within IAI46_17810at 3753.868 kb on + strand, within IAI46_17810at 3753.868 kb on + strand, within IAI46_17810at 3753.868 kb on + strand, within IAI46_17810at 3753.868 kb on + strand, within IAI46_17810at 3753.869 kb on - strand, within IAI46_17810at 3753.869 kb on - strand, within IAI46_17810at 3754.024 kb on - strand, within IAI46_17810at 3754.024 kb on - strand, within IAI46_17810at 3754.045 kb on + strand, within IAI46_17810at 3754.191 kb on - strand, within IAI46_17810at 3754.209 kb on + strand, within IAI46_17810at 3754.213 kb on + strand, within IAI46_17810at 3754.214 kb on - strand, within IAI46_17810at 3754.301 kb on + strand, within IAI46_17810at 3754.301 kb on + strand, within IAI46_17810at 3754.411 kb on - strandat 3754.411 kb on - strandat 3754.430 kb on - strandat 3754.472 kb on + strandat 3754.516 kb on - strandat 3754.553 kb on - strand, within IAI46_17815at 3754.577 kb on - strand, within IAI46_17815at 3754.592 kb on + strand, within IAI46_17815at 3754.672 kb on - strand, within IAI46_17815at 3754.752 kb on - strand, within IAI46_17815at 3754.752 kb on - strand, within IAI46_17815at 3754.759 kb on + strand, within IAI46_17815at 3754.759 kb on + strand, within IAI46_17815at 3754.760 kb on - strand, within IAI46_17815at 3754.760 kb on - strand, within IAI46_17815at 3754.760 kb on - strand, within IAI46_17815at 3754.764 kb on - strand, within IAI46_17815at 3754.764 kb on - strand, within IAI46_17815at 3754.769 kb on + strand, within IAI46_17815at 3754.769 kb on + strand, within IAI46_17815at 3754.769 kb on + strand, within IAI46_17815at 3754.770 kb on - strand, within IAI46_17815at 3754.777 kb on - strand, within IAI46_17815at 3754.777 kb on - strand, within IAI46_17815at 3754.853 kb on - strand, within IAI46_17815at 3754.864 kb on + strand, within IAI46_17815at 3754.977 kb on + strandat 3754.978 kb on - strandat 3754.978 kb on - strandat 3754.978 kb on - strandat 3754.980 kb on - strandat 3754.988 kb on - strandat 3755.008 kb on + strandat 3755.009 kb on - strandat 3755.097 kb on + strandat 3755.104 kb on - strandat 3755.145 kb on + strandat 3755.145 kb on + strandat 3755.146 kb on - strandat 3755.146 kb on - strandat 3755.159 kb on + strandat 3755.186 kb on + strandat 3755.187 kb on - strandat 3755.187 kb on - strandat 3755.189 kb on - strandat 3755.242 kb on + strandat 3755.339 kb on + strand, within IAI46_17820at 3755.339 kb on + strand, within IAI46_17820at 3755.468 kb on + strand, within IAI46_17820at 3755.468 kb on + strand, within IAI46_17820at 3755.468 kb on + strand, within IAI46_17820at 3755.468 kb on + strand, within IAI46_17820at 3755.469 kb on - strand, within IAI46_17820at 3755.469 kb on - strand, within IAI46_17820at 3755.469 kb on - strand, within IAI46_17820at 3755.469 kb on - strand, within IAI46_17820at 3755.901 kb on - strand, within IAI46_17820at 3755.992 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
remove
3,753,521 - IAI46_17810 0.37 -2.3
3,753,536 + IAI46_17810 0.38 -1.2
3,753,557 + IAI46_17810 0.39 -2.9
3,753,664 + IAI46_17810 0.46 -1.1
3,753,713 - IAI46_17810 0.49 -1.5
3,753,787 + IAI46_17810 0.54 -1.7
3,753,787 + IAI46_17810 0.54 +0.8
3,753,787 + IAI46_17810 0.54 -1.2
3,753,787 + IAI46_17810 0.54 -1.1
3,753,787 + IAI46_17810 0.54 -1.4
3,753,788 - IAI46_17810 0.54 -2.4
3,753,867 - IAI46_17810 0.59 -2.4
3,753,867 - IAI46_17810 0.59 -2.8
3,753,867 - IAI46_17810 0.59 -1.9
3,753,867 - IAI46_17810 0.59 -1.6
3,753,867 - IAI46_17810 0.59 -1.0
3,753,867 - IAI46_17810 0.59 -3.4
3,753,868 + IAI46_17810 0.60 -1.7
3,753,868 + IAI46_17810 0.60 -1.8
3,753,868 + IAI46_17810 0.60 -2.2
3,753,868 + IAI46_17810 0.60 +0.2
3,753,868 + IAI46_17810 0.60 -1.9
3,753,869 - IAI46_17810 0.60 -2.5
3,753,869 - IAI46_17810 0.60 -0.2
3,754,024 - IAI46_17810 0.70 -1.1
3,754,024 - IAI46_17810 0.70 -2.3
3,754,045 + IAI46_17810 0.71 -0.8
3,754,191 - IAI46_17810 0.81 -2.1
3,754,209 + IAI46_17810 0.82 +0.4
3,754,213 + IAI46_17810 0.82 -1.7
3,754,214 - IAI46_17810 0.82 -1.1
3,754,301 + IAI46_17810 0.88 -1.2
3,754,301 + IAI46_17810 0.88 -1.0
3,754,411 - +0.4
3,754,411 - -0.2
3,754,430 - -1.5
3,754,472 + -1.4
3,754,516 - -1.4
3,754,553 - IAI46_17815 0.10 +0.8
3,754,577 - IAI46_17815 0.15 -0.3
3,754,592 + IAI46_17815 0.18 -3.8
3,754,672 - IAI46_17815 0.34 +1.7
3,754,752 - IAI46_17815 0.50 -0.2
3,754,752 - IAI46_17815 0.50 +0.0
3,754,759 + IAI46_17815 0.51 -1.2
3,754,759 + IAI46_17815 0.51 +0.6
3,754,760 - IAI46_17815 0.51 +0.5
3,754,760 - IAI46_17815 0.51 -1.4
3,754,760 - IAI46_17815 0.51 -1.8
3,754,764 - IAI46_17815 0.52 -0.1
3,754,764 - IAI46_17815 0.52 -1.2
3,754,769 + IAI46_17815 0.53 -1.7
3,754,769 + IAI46_17815 0.53 -1.0
3,754,769 + IAI46_17815 0.53 -0.7
3,754,770 - IAI46_17815 0.53 +1.0
3,754,777 - IAI46_17815 0.55 +0.2
3,754,777 - IAI46_17815 0.55 +0.7
3,754,853 - IAI46_17815 0.70 -0.3
3,754,864 + IAI46_17815 0.72 -1.0
3,754,977 + -0.5
3,754,978 - +0.1
3,754,978 - +0.6
3,754,978 - -0.1
3,754,980 - +0.0
3,754,988 - -0.8
3,755,008 + -1.8
3,755,009 - -1.4
3,755,097 + +0.1
3,755,104 - -0.2
3,755,145 + +0.1
3,755,145 + +1.1
3,755,146 - -1.3
3,755,146 - +2.2
3,755,159 + -1.7
3,755,186 + +0.6
3,755,187 - +0.3
3,755,187 - +0.8
3,755,189 - +0.3
3,755,242 + +0.3
3,755,339 + IAI46_17820 0.13 -0.0
3,755,339 + IAI46_17820 0.13 +0.1
3,755,468 + IAI46_17820 0.30 -0.7
3,755,468 + IAI46_17820 0.30 +0.2
3,755,468 + IAI46_17820 0.30 +0.3
3,755,468 + IAI46_17820 0.30 -0.5
3,755,469 - IAI46_17820 0.30 -0.3
3,755,469 - IAI46_17820 0.30 +0.7
3,755,469 - IAI46_17820 0.30 +0.2
3,755,469 - IAI46_17820 0.30 -0.8
3,755,901 - IAI46_17820 0.87 -0.5
3,755,992 - +0.2

Or see this region's nucleotide sequence