Experiment: dichromate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_17445 and IAI46_17450 overlap by 8 nucleotides IAI46_17450 and IAI46_17455 are separated by 50 nucleotides IAI46_17455 and IAI46_17460 are separated by 164 nucleotides
IAI46_17445: IAI46_17445 - phosphotransferase RcsD, at 3,661,832 to 3,664,534
_17445
IAI46_17450: IAI46_17450 - transcriptional regulator RcsB, at 3,664,527 to 3,665,177
_17450
IAI46_17455: IAI46_17455 - two-component system sensor histidine kinase RcsC, at 3,665,228 to 3,668,098
_17455
IAI46_17460: IAI46_17460 - DNA topoisomerase (ATP-hydrolyzing) subunit A, at 3,668,263 to 3,670,914
_17460
Position (kb)
3665
3666
3667
3668
3669 Strain fitness (log2 ratio)
-2
-1
0
1 at 3664.266 kb on - strand at 3664.389 kb on + strand at 3664.468 kb on + strand at 3664.516 kb on + strand at 3664.517 kb on - strand at 3664.532 kb on + strand at 3664.543 kb on + strand at 3664.547 kb on + strand at 3664.565 kb on + strand at 3664.566 kb on - strand at 3664.566 kb on - strand at 3664.716 kb on + strand, within IAI46_17450 at 3664.730 kb on + strand, within IAI46_17450 at 3664.743 kb on + strand, within IAI46_17450 at 3664.847 kb on - strand, within IAI46_17450 at 3665.136 kb on + strand at 3665.175 kb on + strand at 3665.176 kb on - strand at 3665.179 kb on + strand at 3665.180 kb on - strand at 3665.180 kb on - strand at 3665.229 kb on + strand at 3665.230 kb on - strand at 3665.275 kb on - strand at 3665.329 kb on + strand at 3665.347 kb on + strand at 3665.347 kb on + strand at 3665.348 kb on - strand at 3665.439 kb on + strand at 3665.459 kb on - strand at 3665.474 kb on + strand at 3665.501 kb on + strand at 3665.501 kb on + strand at 3665.501 kb on + strand at 3665.557 kb on + strand, within IAI46_17455 at 3665.557 kb on + strand, within IAI46_17455 at 3665.558 kb on - strand, within IAI46_17455 at 3665.610 kb on - strand, within IAI46_17455 at 3665.610 kb on - strand, within IAI46_17455 at 3665.671 kb on + strand, within IAI46_17455 at 3665.754 kb on + strand, within IAI46_17455 at 3665.892 kb on - strand, within IAI46_17455 at 3665.892 kb on - strand, within IAI46_17455 at 3665.892 kb on - strand, within IAI46_17455 at 3665.931 kb on + strand, within IAI46_17455 at 3665.986 kb on + strand, within IAI46_17455 at 3666.031 kb on + strand, within IAI46_17455 at 3666.032 kb on - strand, within IAI46_17455 at 3666.426 kb on + strand, within IAI46_17455 at 3666.629 kb on - strand, within IAI46_17455 at 3666.646 kb on + strand, within IAI46_17455 at 3666.791 kb on - strand, within IAI46_17455 at 3666.826 kb on + strand, within IAI46_17455 at 3666.886 kb on + strand, within IAI46_17455 at 3666.924 kb on + strand, within IAI46_17455 at 3666.925 kb on - strand, within IAI46_17455 at 3666.925 kb on - strand, within IAI46_17455 at 3666.952 kb on + strand, within IAI46_17455 at 3666.980 kb on - strand, within IAI46_17455 at 3667.246 kb on - strand, within IAI46_17455 at 3667.257 kb on + strand, within IAI46_17455 at 3667.258 kb on - strand, within IAI46_17455 at 3667.267 kb on - strand, within IAI46_17455 at 3667.406 kb on + strand, within IAI46_17455 at 3667.406 kb on + strand, within IAI46_17455 at 3667.407 kb on - strand, within IAI46_17455 at 3667.407 kb on - strand, within IAI46_17455 at 3667.407 kb on - strand, within IAI46_17455 at 3667.466 kb on + strand, within IAI46_17455 at 3667.467 kb on - strand, within IAI46_17455 at 3667.470 kb on + strand, within IAI46_17455 at 3667.471 kb on - strand, within IAI46_17455 at 3667.471 kb on - strand, within IAI46_17455 at 3667.471 kb on - strand, within IAI46_17455 at 3667.477 kb on - strand, within IAI46_17455 at 3667.516 kb on - strand, within IAI46_17455 at 3667.516 kb on - strand, within IAI46_17455 at 3667.532 kb on - strand, within IAI46_17455 at 3667.558 kb on + strand, within IAI46_17455 at 3667.559 kb on - strand, within IAI46_17455 at 3667.559 kb on - strand, within IAI46_17455 at 3667.677 kb on + strand, within IAI46_17455 at 3667.678 kb on - strand, within IAI46_17455 at 3667.744 kb on - strand, within IAI46_17455 at 3667.744 kb on - strand, within IAI46_17455 at 3667.751 kb on - strand, within IAI46_17455 at 3667.753 kb on + strand, within IAI46_17455 at 3667.754 kb on - strand, within IAI46_17455 at 3667.944 kb on + strand at 3667.944 kb on + strand at 3667.981 kb on + strand at 3667.992 kb on + strand at 3667.992 kb on + strand at 3668.176 kb on + strand at 3668.177 kb on - strand at 3668.183 kb on + strand at 3668.183 kb on + strand at 3668.183 kb on + strand at 3668.201 kb on + strand at 3668.202 kb on - strand at 3668.223 kb on - strand at 3668.238 kb on - strand at 3668.257 kb on + strand at 3668.342 kb on - strand at 3668.368 kb on - strand at 3668.387 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic remove 3,664,266 - -0.6 3,664,389 + +0.1 3,664,468 + -0.9 3,664,516 + +0.4 3,664,517 - +0.8 3,664,532 + -0.4 3,664,543 + +0.4 3,664,547 + +0.1 3,664,565 + -1.3 3,664,566 - -0.4 3,664,566 - -1.0 3,664,716 + IAI46_17450 0.29 -0.5 3,664,730 + IAI46_17450 0.31 -1.3 3,664,743 + IAI46_17450 0.33 +0.2 3,664,847 - IAI46_17450 0.49 -1.3 3,665,136 + -0.2 3,665,175 + +0.4 3,665,176 - -1.1 3,665,179 + +0.0 3,665,180 - -0.2 3,665,180 - -0.2 3,665,229 + +0.4 3,665,230 - -1.3 3,665,275 - -0.6 3,665,329 + +0.4 3,665,347 + +0.2 3,665,347 + +0.4 3,665,348 - +1.0 3,665,439 + -0.5 3,665,459 - -0.4 3,665,474 + -0.6 3,665,501 + +0.7 3,665,501 + +0.6 3,665,501 + -1.4 3,665,557 + IAI46_17455 0.11 +0.9 3,665,557 + IAI46_17455 0.11 +1.5 3,665,558 - IAI46_17455 0.11 +1.1 3,665,610 - IAI46_17455 0.13 +0.3 3,665,610 - IAI46_17455 0.13 -0.7 3,665,671 + IAI46_17455 0.15 +0.3 3,665,754 + IAI46_17455 0.18 +0.7 3,665,892 - IAI46_17455 0.23 -1.4 3,665,892 - IAI46_17455 0.23 +0.4 3,665,892 - IAI46_17455 0.23 +0.5 3,665,931 + IAI46_17455 0.24 -1.6 3,665,986 + IAI46_17455 0.26 +0.0 3,666,031 + IAI46_17455 0.28 -1.1 3,666,032 - IAI46_17455 0.28 -0.1 3,666,426 + IAI46_17455 0.42 -1.8 3,666,629 - IAI46_17455 0.49 +0.3 3,666,646 + IAI46_17455 0.49 -0.9 3,666,791 - IAI46_17455 0.54 +0.3 3,666,826 + IAI46_17455 0.56 +0.4 3,666,886 + IAI46_17455 0.58 +0.3 3,666,924 + IAI46_17455 0.59 -0.8 3,666,925 - IAI46_17455 0.59 +1.1 3,666,925 - IAI46_17455 0.59 +0.3 3,666,952 + IAI46_17455 0.60 -0.4 3,666,980 - IAI46_17455 0.61 +0.3 3,667,246 - IAI46_17455 0.70 -0.5 3,667,257 + IAI46_17455 0.71 -0.3 3,667,258 - IAI46_17455 0.71 +0.3 3,667,267 - IAI46_17455 0.71 -0.1 3,667,406 + IAI46_17455 0.76 +1.0 3,667,406 + IAI46_17455 0.76 +0.4 3,667,407 - IAI46_17455 0.76 -0.7 3,667,407 - IAI46_17455 0.76 +1.0 3,667,407 - IAI46_17455 0.76 +0.3 3,667,466 + IAI46_17455 0.78 +1.2 3,667,467 - IAI46_17455 0.78 +0.0 3,667,470 + IAI46_17455 0.78 -0.6 3,667,471 - IAI46_17455 0.78 +0.7 3,667,471 - IAI46_17455 0.78 +0.2 3,667,471 - IAI46_17455 0.78 +0.7 3,667,477 - IAI46_17455 0.78 +1.4 3,667,516 - IAI46_17455 0.80 -0.5 3,667,516 - IAI46_17455 0.80 +0.4 3,667,532 - IAI46_17455 0.80 -0.4 3,667,558 + IAI46_17455 0.81 +0.4 3,667,559 - IAI46_17455 0.81 -0.1 3,667,559 - IAI46_17455 0.81 -0.4 3,667,677 + IAI46_17455 0.85 +0.3 3,667,678 - IAI46_17455 0.85 -0.2 3,667,744 - IAI46_17455 0.88 +0.8 3,667,744 - IAI46_17455 0.88 +0.6 3,667,751 - IAI46_17455 0.88 +0.5 3,667,753 + IAI46_17455 0.88 -0.5 3,667,754 - IAI46_17455 0.88 -0.2 3,667,944 + -0.0 3,667,944 + -0.0 3,667,981 + -1.6 3,667,992 + -0.3 3,667,992 + +0.0 3,668,176 + -0.0 3,668,177 - +1.4 3,668,183 + -0.5 3,668,183 + -0.2 3,668,183 + +0.4 3,668,201 + -0.1 3,668,202 - +1.7 3,668,223 - -0.3 3,668,238 - +1.6 3,668,257 + +1.1 3,668,342 - +1.1 3,668,368 - +0.1 3,668,387 - +0.2
Or see this region's nucleotide sequence