Experiment: dichromate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_16880 and IAI46_16885 overlap by 4 nucleotides IAI46_16885 and IAI46_16890 overlap by 4 nucleotides IAI46_16890 and IAI46_16895 are separated by 10 nucleotides
IAI46_16880: IAI46_16880 - ABC transporter ATP-binding protein, at 3,538,453 to 3,540,129
_16880
IAI46_16885: IAI46_16885 - ABC transporter permease, at 3,540,126 to 3,541,016
_16885
IAI46_16890: IAI46_16890 - ABC transporter permease, at 3,541,013 to 3,541,957
_16890
IAI46_16895: IAI46_16895 - TIGR04028 family ABC transporter substrate-binding protein, at 3,541,968 to 3,543,593
_16895
Position (kb)
3540
3541
3542 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3539.161 kb on - strand, within IAI46_16880 at 3539.345 kb on + strand, within IAI46_16880 at 3539.413 kb on + strand, within IAI46_16880 at 3539.888 kb on - strand, within IAI46_16880 at 3539.888 kb on - strand, within IAI46_16880 at 3540.053 kb on + strand at 3540.110 kb on - strand at 3540.110 kb on - strand at 3540.130 kb on - strand at 3540.130 kb on - strand at 3540.130 kb on - strand at 3540.211 kb on - strand at 3540.230 kb on + strand, within IAI46_16885 at 3540.231 kb on - strand, within IAI46_16885 at 3540.411 kb on - strand, within IAI46_16885 at 3540.424 kb on + strand, within IAI46_16885 at 3540.425 kb on - strand, within IAI46_16885 at 3540.439 kb on + strand, within IAI46_16885 at 3540.681 kb on + strand, within IAI46_16885 at 3540.742 kb on + strand, within IAI46_16885 at 3540.743 kb on - strand, within IAI46_16885 at 3540.913 kb on - strand, within IAI46_16885 at 3541.007 kb on + strand at 3541.008 kb on - strand at 3541.240 kb on + strand, within IAI46_16890 at 3541.353 kb on - strand, within IAI46_16890 at 3541.594 kb on + strand, within IAI46_16890 at 3541.594 kb on + strand, within IAI46_16890 at 3541.755 kb on + strand, within IAI46_16890 at 3541.756 kb on - strand, within IAI46_16890 at 3541.785 kb on + strand, within IAI46_16890 at 3541.880 kb on + strand at 3541.885 kb on + strand at 3541.994 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic remove 3,539,161 - IAI46_16880 0.42 +0.7 3,539,345 + IAI46_16880 0.53 -0.9 3,539,413 + IAI46_16880 0.57 -1.7 3,539,888 - IAI46_16880 0.86 -0.7 3,539,888 - IAI46_16880 0.86 +1.1 3,540,053 + +0.7 3,540,110 - +0.3 3,540,110 - +0.2 3,540,130 - +0.5 3,540,130 - +0.5 3,540,130 - -0.6 3,540,211 - -0.0 3,540,230 + IAI46_16885 0.12 -0.2 3,540,231 - IAI46_16885 0.12 +0.8 3,540,411 - IAI46_16885 0.32 +1.5 3,540,424 + IAI46_16885 0.33 -0.3 3,540,425 - IAI46_16885 0.34 -0.0 3,540,439 + IAI46_16885 0.35 -1.2 3,540,681 + IAI46_16885 0.62 +2.2 3,540,742 + IAI46_16885 0.69 +0.7 3,540,743 - IAI46_16885 0.69 -0.7 3,540,913 - IAI46_16885 0.88 -0.4 3,541,007 + -0.2 3,541,008 - +0.5 3,541,240 + IAI46_16890 0.24 +0.2 3,541,353 - IAI46_16890 0.36 +0.1 3,541,594 + IAI46_16890 0.61 +0.5 3,541,594 + IAI46_16890 0.61 -2.6 3,541,755 + IAI46_16890 0.79 -1.3 3,541,756 - IAI46_16890 0.79 +0.2 3,541,785 + IAI46_16890 0.82 -0.2 3,541,880 + +0.1 3,541,885 + +0.5 3,541,994 - -0.7
Or see this region's nucleotide sequence