Strain Fitness in Serratia liquefaciens MT49 around IAI46_16750

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16740 and IAI46_16745 are separated by 288 nucleotidesIAI46_16745 and IAI46_16750 overlap by 4 nucleotidesIAI46_16750 and IAI46_16755 are separated by 1 nucleotides IAI46_16740: IAI46_16740 - efflux RND transporter periplasmic adaptor subunit, at 3,511,156 to 3,512,358 _16740 IAI46_16745: IAI46_16745 - heavy metal response regulator transcription factor, at 3,512,647 to 3,513,354 _16745 IAI46_16750: IAI46_16750 - heavy metal sensor histidine kinase, at 3,513,351 to 3,514,808 _16750 IAI46_16755: IAI46_16755 - nitrogen assimilation transcriptional regulator NAC, at 3,514,810 to 3,515,733 _16755 Position (kb) 3513 3514 3515Strain fitness (log2 ratio) -1 0 1 2at 3512.428 kb on + strandat 3512.428 kb on + strandat 3512.429 kb on - strandat 3512.464 kb on + strandat 3512.465 kb on - strandat 3512.465 kb on - strandat 3512.612 kb on + strandat 3512.616 kb on + strandat 3512.654 kb on + strandat 3512.720 kb on - strand, within IAI46_16745at 3512.727 kb on - strand, within IAI46_16745at 3512.727 kb on - strand, within IAI46_16745at 3512.727 kb on - strand, within IAI46_16745at 3512.727 kb on - strand, within IAI46_16745at 3512.780 kb on - strand, within IAI46_16745at 3512.780 kb on - strand, within IAI46_16745at 3512.824 kb on + strand, within IAI46_16745at 3512.935 kb on + strand, within IAI46_16745at 3512.935 kb on + strand, within IAI46_16745at 3512.935 kb on + strand, within IAI46_16745at 3512.936 kb on - strand, within IAI46_16745at 3513.090 kb on + strand, within IAI46_16745at 3513.091 kb on - strand, within IAI46_16745at 3513.152 kb on + strand, within IAI46_16745at 3513.153 kb on - strand, within IAI46_16745at 3513.302 kb on - strandat 3513.727 kb on - strand, within IAI46_16750at 3513.729 kb on - strand, within IAI46_16750at 3513.729 kb on - strand, within IAI46_16750at 3513.777 kb on + strand, within IAI46_16750at 3513.805 kb on - strand, within IAI46_16750at 3513.805 kb on - strand, within IAI46_16750at 3513.806 kb on + strand, within IAI46_16750at 3513.806 kb on + strand, within IAI46_16750at 3513.807 kb on - strand, within IAI46_16750at 3514.160 kb on - strand, within IAI46_16750at 3514.264 kb on - strand, within IAI46_16750at 3514.811 kb on + strandat 3514.817 kb on - strandat 3515.234 kb on + strand, within IAI46_16755at 3515.341 kb on - strand, within IAI46_16755at 3515.369 kb on - strand, within IAI46_16755at 3515.540 kb on + strand, within IAI46_16755at 3515.540 kb on + strand, within IAI46_16755at 3515.733 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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3,512,428 + +0.3
3,512,428 + +0.6
3,512,429 - +1.6
3,512,464 + -0.3
3,512,465 - +0.3
3,512,465 - +0.6
3,512,612 + +0.3
3,512,616 + +0.2
3,512,654 + -0.2
3,512,720 - IAI46_16745 0.10 -0.6
3,512,727 - IAI46_16745 0.11 -0.5
3,512,727 - IAI46_16745 0.11 -0.1
3,512,727 - IAI46_16745 0.11 -0.2
3,512,727 - IAI46_16745 0.11 +0.2
3,512,780 - IAI46_16745 0.19 +0.3
3,512,780 - IAI46_16745 0.19 -0.2
3,512,824 + IAI46_16745 0.25 +0.4
3,512,935 + IAI46_16745 0.41 +0.6
3,512,935 + IAI46_16745 0.41 +1.9
3,512,935 + IAI46_16745 0.41 -1.3
3,512,936 - IAI46_16745 0.41 +1.6
3,513,090 + IAI46_16745 0.63 +1.6
3,513,091 - IAI46_16745 0.63 +0.5
3,513,152 + IAI46_16745 0.71 -0.1
3,513,153 - IAI46_16745 0.71 -0.4
3,513,302 - +0.9
3,513,727 - IAI46_16750 0.26 +0.4
3,513,729 - IAI46_16750 0.26 +0.6
3,513,729 - IAI46_16750 0.26 -0.0
3,513,777 + IAI46_16750 0.29 +0.4
3,513,805 - IAI46_16750 0.31 +0.6
3,513,805 - IAI46_16750 0.31 +0.9
3,513,806 + IAI46_16750 0.31 +1.0
3,513,806 + IAI46_16750 0.31 -0.6
3,513,807 - IAI46_16750 0.31 +0.1
3,514,160 - IAI46_16750 0.55 +0.7
3,514,264 - IAI46_16750 0.63 -0.5
3,514,811 + -0.5
3,514,817 - +0.3
3,515,234 + IAI46_16755 0.46 -0.1
3,515,341 - IAI46_16755 0.57 -0.2
3,515,369 - IAI46_16755 0.60 +0.1
3,515,540 + IAI46_16755 0.79 +0.7
3,515,540 + IAI46_16755 0.79 -0.3
3,515,733 + +0.5

Or see this region's nucleotide sequence