Strain Fitness in Serratia liquefaciens MT49 around IAI46_16110

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16100 and IAI46_16105 are separated by 2 nucleotidesIAI46_16105 and IAI46_16110 overlap by 17 nucleotidesIAI46_16110 and IAI46_16115 overlap by 4 nucleotidesIAI46_16115 and IAI46_16120 overlap by 4 nucleotides IAI46_16100: IAI46_16100 - ornithine cyclodeaminase family protein, at 3,375,806 to 3,376,756 _16100 IAI46_16105: IAI46_16105 - 4-hydroxy-2-oxovalerate aldolase, at 3,376,759 to 3,377,760 _16105 IAI46_16110: IAI46_16110 - acetaldehyde dehydrogenase (acetylating), at 3,377,744 to 3,378,631 _16110 IAI46_16115: IAI46_16115 - CoA ester lyase, at 3,378,628 to 3,379,491 _16115 IAI46_16120: IAI46_16120 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 3,379,488 to 3,380,711 _16120 Position (kb) 3377 3378 3379Strain fitness (log2 ratio) -2 -1 0 1 2at 3376.795 kb on + strandat 3376.795 kb on + strandat 3376.796 kb on - strandat 3376.796 kb on - strandat 3377.176 kb on - strand, within IAI46_16105at 3377.298 kb on - strand, within IAI46_16105at 3377.363 kb on - strand, within IAI46_16105at 3377.455 kb on + strand, within IAI46_16105at 3377.515 kb on - strand, within IAI46_16105at 3377.659 kb on - strand, within IAI46_16105at 3377.663 kb on - strandat 3377.762 kb on - strandat 3377.793 kb on + strandat 3377.847 kb on + strand, within IAI46_16110at 3377.847 kb on + strand, within IAI46_16110at 3378.130 kb on - strand, within IAI46_16110at 3378.130 kb on - strand, within IAI46_16110at 3378.311 kb on - strand, within IAI46_16110at 3378.345 kb on - strand, within IAI46_16110at 3378.345 kb on - strand, within IAI46_16110at 3378.574 kb on + strandat 3378.948 kb on + strand, within IAI46_16115at 3378.948 kb on + strand, within IAI46_16115at 3379.327 kb on - strand, within IAI46_16115at 3379.367 kb on - strand, within IAI46_16115at 3379.393 kb on + strand, within IAI46_16115at 3379.394 kb on - strand, within IAI46_16115at 3379.406 kb on + strandat 3379.432 kb on + strandat 3379.622 kb on - strand, within IAI46_16120

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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3,376,795 + +0.0
3,376,795 + -0.2
3,376,796 - +0.7
3,376,796 - +1.8
3,377,176 - IAI46_16105 0.42 +0.5
3,377,298 - IAI46_16105 0.54 +0.7
3,377,363 - IAI46_16105 0.60 -0.4
3,377,455 + IAI46_16105 0.69 +0.4
3,377,515 - IAI46_16105 0.75 +0.7
3,377,659 - IAI46_16105 0.90 +1.2
3,377,663 - +0.3
3,377,762 - -0.6
3,377,793 + +2.2
3,377,847 + IAI46_16110 0.12 -1.8
3,377,847 + IAI46_16110 0.12 +0.4
3,378,130 - IAI46_16110 0.43 -0.4
3,378,130 - IAI46_16110 0.43 +2.0
3,378,311 - IAI46_16110 0.64 +0.5
3,378,345 - IAI46_16110 0.68 -1.3
3,378,345 - IAI46_16110 0.68 +0.3
3,378,574 + -0.5
3,378,948 + IAI46_16115 0.37 -0.5
3,378,948 + IAI46_16115 0.37 +1.1
3,379,327 - IAI46_16115 0.81 -0.4
3,379,367 - IAI46_16115 0.86 -0.4
3,379,393 + IAI46_16115 0.89 -0.1
3,379,394 - IAI46_16115 0.89 +0.5
3,379,406 + -0.9
3,379,432 + -1.0
3,379,622 - IAI46_16120 0.11 +0.6

Or see this region's nucleotide sequence