Strain Fitness in Serratia liquefaciens MT49 around IAI46_15935

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15930 and IAI46_15935 are separated by 235 nucleotidesIAI46_15935 and IAI46_15940 are separated by 18 nucleotidesIAI46_15940 and IAI46_15945 are separated by 12 nucleotides IAI46_15930: IAI46_15930 - flagellar basal body L-ring protein FlgH, at 3,343,997 to 3,344,695 _15930 IAI46_15935: IAI46_15935 - flagellar basal-body rod protein FlgG, at 3,344,931 to 3,345,713 _15935 IAI46_15940: IAI46_15940 - flagellar basal body rod protein FlgF, at 3,345,732 to 3,346,487 _15940 IAI46_15945: IAI46_15945 - flagellar hook protein FlgE, at 3,346,500 to 3,347,723 _15945 Position (kb) 3344 3345 3346Strain fitness (log2 ratio) -2 -1 0 1at 3343.987 kb on + strandat 3344.015 kb on + strandat 3344.016 kb on - strandat 3344.016 kb on - strandat 3344.031 kb on - strandat 3344.031 kb on - strandat 3344.076 kb on + strand, within IAI46_15930at 3344.110 kb on + strand, within IAI46_15930at 3344.263 kb on + strand, within IAI46_15930at 3344.320 kb on + strand, within IAI46_15930at 3344.321 kb on - strand, within IAI46_15930at 3344.345 kb on + strand, within IAI46_15930at 3344.345 kb on + strand, within IAI46_15930at 3344.346 kb on - strand, within IAI46_15930at 3344.517 kb on + strand, within IAI46_15930at 3344.517 kb on + strand, within IAI46_15930at 3344.518 kb on - strand, within IAI46_15930at 3344.614 kb on + strand, within IAI46_15930at 3344.615 kb on - strand, within IAI46_15930at 3344.615 kb on - strand, within IAI46_15930at 3344.739 kb on - strandat 3344.740 kb on - strandat 3344.816 kb on + strandat 3344.932 kb on + strandat 3344.933 kb on - strandat 3344.995 kb on + strandat 3344.996 kb on - strandat 3345.061 kb on + strand, within IAI46_15935at 3345.062 kb on - strand, within IAI46_15935at 3345.179 kb on + strand, within IAI46_15935at 3345.373 kb on + strand, within IAI46_15935at 3345.577 kb on + strand, within IAI46_15935at 3345.577 kb on + strand, within IAI46_15935at 3345.659 kb on + strandat 3346.101 kb on + strand, within IAI46_15940at 3346.179 kb on - strand, within IAI46_15940at 3346.192 kb on + strand, within IAI46_15940at 3346.271 kb on - strand, within IAI46_15940at 3346.415 kb on + strandat 3346.487 kb on + strandat 3346.488 kb on - strandat 3346.499 kb on - strandat 3346.501 kb on + strandat 3346.501 kb on + strandat 3346.502 kb on - strandat 3346.567 kb on + strandat 3346.571 kb on + strandat 3346.571 kb on + strandat 3346.571 kb on + strandat 3346.571 kb on + strandat 3346.572 kb on - strandat 3346.678 kb on - strand, within IAI46_15945at 3346.678 kb on - strand, within IAI46_15945

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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3,343,987 + -0.9
3,344,015 + +0.0
3,344,016 - +1.0
3,344,016 - +0.6
3,344,031 - -0.6
3,344,031 - +1.0
3,344,076 + IAI46_15930 0.11 +0.4
3,344,110 + IAI46_15930 0.16 -0.7
3,344,263 + IAI46_15930 0.38 +0.6
3,344,320 + IAI46_15930 0.46 -0.5
3,344,321 - IAI46_15930 0.46 +0.8
3,344,345 + IAI46_15930 0.50 +0.7
3,344,345 + IAI46_15930 0.50 +0.9
3,344,346 - IAI46_15930 0.50 +0.1
3,344,517 + IAI46_15930 0.74 -0.6
3,344,517 + IAI46_15930 0.74 +0.5
3,344,518 - IAI46_15930 0.75 -0.1
3,344,614 + IAI46_15930 0.88 -0.1
3,344,615 - IAI46_15930 0.88 -0.4
3,344,615 - IAI46_15930 0.88 +1.6
3,344,739 - +0.4
3,344,740 - -1.5
3,344,816 + +1.0
3,344,932 + +0.2
3,344,933 - +0.0
3,344,995 + -0.3
3,344,996 - -0.7
3,345,061 + IAI46_15935 0.17 -1.8
3,345,062 - IAI46_15935 0.17 +0.1
3,345,179 + IAI46_15935 0.32 +0.6
3,345,373 + IAI46_15935 0.56 -0.3
3,345,577 + IAI46_15935 0.83 -0.1
3,345,577 + IAI46_15935 0.83 -0.4
3,345,659 + -0.2
3,346,101 + IAI46_15940 0.49 +0.2
3,346,179 - IAI46_15940 0.59 +0.1
3,346,192 + IAI46_15940 0.61 -0.7
3,346,271 - IAI46_15940 0.71 +0.5
3,346,415 + -0.9
3,346,487 + -0.4
3,346,488 - +0.2
3,346,499 - +0.1
3,346,501 + +0.6
3,346,501 + -0.6
3,346,502 - +0.5
3,346,567 + +1.4
3,346,571 + -0.1
3,346,571 + +1.0
3,346,571 + -0.4
3,346,571 + +0.7
3,346,572 - +0.1
3,346,678 - IAI46_15945 0.15 -1.0
3,346,678 - IAI46_15945 0.15 +0.7

Or see this region's nucleotide sequence