Strain Fitness in Serratia liquefaciens MT49 around IAI46_15755

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15745 and IAI46_15750 are separated by 166 nucleotidesIAI46_15750 and IAI46_15755 are separated by 29 nucleotidesIAI46_15755 and IAI46_15760 are separated by 31 nucleotidesIAI46_15760 and IAI46_15765 are separated by 3 nucleotides IAI46_15745: IAI46_15745 - trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase, at 3,306,659 to 3,310,630 _15745 IAI46_15750: IAI46_15750 - type II toxin-antitoxin system HicA family toxin, at 3,310,797 to 3,310,979 _15750 IAI46_15755: IAI46_15755 - type II toxin-antitoxin system HicB family antitoxin, at 3,311,009 to 3,311,422 _15755 IAI46_15760: IAI46_15760 - L-cystine ABC transporter ATP-binding protein YecC, at 3,311,454 to 3,312,206 _15760 IAI46_15765: IAI46_15765 - cystine ABC transporter permease, at 3,312,210 to 3,312,872 _15765 Position (kb) 3311 3312Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3310.182 kb on + strand, within IAI46_15745at 3310.183 kb on - strand, within IAI46_15745at 3310.220 kb on + strand, within IAI46_15745at 3310.220 kb on + strand, within IAI46_15745at 3310.221 kb on - strand, within IAI46_15745at 3310.221 kb on - strand, within IAI46_15745at 3310.221 kb on - strand, within IAI46_15745at 3310.221 kb on - strand, within IAI46_15745at 3310.439 kb on + strandat 3310.727 kb on + strandat 3310.727 kb on + strandat 3310.825 kb on + strand, within IAI46_15750at 3310.825 kb on + strand, within IAI46_15750at 3310.826 kb on - strand, within IAI46_15750at 3310.977 kb on + strandat 3311.258 kb on - strand, within IAI46_15755at 3311.260 kb on + strand, within IAI46_15755at 3311.260 kb on + strand, within IAI46_15755at 3311.260 kb on + strand, within IAI46_15755at 3311.260 kb on + strand, within IAI46_15755at 3311.261 kb on - strand, within IAI46_15755at 3311.269 kb on + strand, within IAI46_15755at 3311.269 kb on + strand, within IAI46_15755at 3311.293 kb on + strand, within IAI46_15755at 3311.302 kb on + strand, within IAI46_15755at 3311.302 kb on + strand, within IAI46_15755at 3311.303 kb on - strand, within IAI46_15755at 3311.303 kb on - strand, within IAI46_15755at 3311.331 kb on + strand, within IAI46_15755at 3311.332 kb on - strand, within IAI46_15755at 3311.402 kb on + strandat 3311.455 kb on + strandat 3311.456 kb on - strandat 3311.489 kb on + strandat 3311.490 kb on - strandat 3311.544 kb on - strand, within IAI46_15760at 3311.647 kb on - strand, within IAI46_15760at 3311.647 kb on - strand, within IAI46_15760at 3311.647 kb on - strand, within IAI46_15760at 3311.647 kb on - strand, within IAI46_15760at 3312.115 kb on - strand, within IAI46_15760at 3312.308 kb on - strand, within IAI46_15765at 3312.308 kb on - strand, within IAI46_15765at 3312.308 kb on - strand, within IAI46_15765

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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3,310,182 + IAI46_15745 0.89 +0.2
3,310,183 - IAI46_15745 0.89 +0.3
3,310,220 + IAI46_15745 0.90 +0.5
3,310,220 + IAI46_15745 0.90 +0.4
3,310,221 - IAI46_15745 0.90 -0.7
3,310,221 - IAI46_15745 0.90 -1.0
3,310,221 - IAI46_15745 0.90 -0.1
3,310,221 - IAI46_15745 0.90 +0.5
3,310,439 + +0.7
3,310,727 + -2.5
3,310,727 + -1.1
3,310,825 + IAI46_15750 0.15 -0.4
3,310,825 + IAI46_15750 0.15 -1.3
3,310,826 - IAI46_15750 0.16 +0.3
3,310,977 + -0.5
3,311,258 - IAI46_15755 0.60 +0.8
3,311,260 + IAI46_15755 0.61 +0.3
3,311,260 + IAI46_15755 0.61 +0.8
3,311,260 + IAI46_15755 0.61 +0.7
3,311,260 + IAI46_15755 0.61 +0.5
3,311,261 - IAI46_15755 0.61 -3.0
3,311,269 + IAI46_15755 0.63 +1.9
3,311,269 + IAI46_15755 0.63 +0.8
3,311,293 + IAI46_15755 0.69 +0.3
3,311,302 + IAI46_15755 0.71 -0.2
3,311,302 + IAI46_15755 0.71 -0.7
3,311,303 - IAI46_15755 0.71 +0.5
3,311,303 - IAI46_15755 0.71 +0.6
3,311,331 + IAI46_15755 0.78 +0.4
3,311,332 - IAI46_15755 0.78 -0.7
3,311,402 + +0.6
3,311,455 + +0.5
3,311,456 - +0.8
3,311,489 + -0.7
3,311,490 - +0.0
3,311,544 - IAI46_15760 0.12 +0.6
3,311,647 - IAI46_15760 0.26 -1.3
3,311,647 - IAI46_15760 0.26 +0.6
3,311,647 - IAI46_15760 0.26 +0.4
3,311,647 - IAI46_15760 0.26 +0.6
3,312,115 - IAI46_15760 0.88 -0.1
3,312,308 - IAI46_15765 0.15 +0.3
3,312,308 - IAI46_15765 0.15 -0.3
3,312,308 - IAI46_15765 0.15 -0.6

Or see this region's nucleotide sequence