Strain Fitness in Serratia liquefaciens MT49 around IAI46_15480

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15475 and IAI46_15480 are separated by 429 nucleotidesIAI46_15480 and IAI46_15485 are separated by 68 nucleotidesIAI46_15485 and IAI46_15490 are separated by 57 nucleotides IAI46_15475: IAI46_15475 - tyrosine-type recombinase/integrase, at 3,239,225 to 3,239,836 _15475 IAI46_15480: IAI46_15480 - fimbrial protein, at 3,240,266 to 3,240,811 _15480 IAI46_15485: IAI46_15485 - molecular chaperone, at 3,240,880 to 3,241,554 _15485 IAI46_15490: IAI46_15490 - fimbrial biogenesis outer membrane usher protein, at 3,241,612 to 3,244,140 _15490 Position (kb) 3240 3241Strain fitness (log2 ratio) -2 -1 0 1at 3239.372 kb on - strand, within IAI46_15475at 3239.374 kb on + strand, within IAI46_15475at 3239.417 kb on + strand, within IAI46_15475at 3239.585 kb on + strand, within IAI46_15475at 3239.644 kb on + strand, within IAI46_15475at 3239.644 kb on + strand, within IAI46_15475at 3239.645 kb on - strand, within IAI46_15475at 3239.712 kb on - strand, within IAI46_15475at 3239.737 kb on + strand, within IAI46_15475at 3239.737 kb on + strand, within IAI46_15475at 3239.747 kb on + strand, within IAI46_15475at 3239.748 kb on - strand, within IAI46_15475at 3239.859 kb on + strandat 3239.859 kb on + strandat 3239.860 kb on - strandat 3239.860 kb on - strandat 3239.860 kb on - strandat 3239.860 kb on - strandat 3239.860 kb on - strandat 3239.984 kb on - strandat 3239.988 kb on - strandat 3240.137 kb on - strandat 3240.259 kb on + strandat 3240.259 kb on + strandat 3240.344 kb on - strand, within IAI46_15480at 3240.665 kb on + strand, within IAI46_15480at 3240.665 kb on + strand, within IAI46_15480at 3240.666 kb on - strand, within IAI46_15480at 3240.666 kb on - strand, within IAI46_15480at 3240.737 kb on + strand, within IAI46_15480at 3240.803 kb on + strandat 3240.804 kb on - strandat 3240.887 kb on - strandat 3240.914 kb on + strandat 3240.914 kb on + strandat 3241.186 kb on + strand, within IAI46_15485at 3241.187 kb on - strand, within IAI46_15485at 3241.375 kb on + strand, within IAI46_15485at 3241.376 kb on - strand, within IAI46_15485at 3241.429 kb on + strand, within IAI46_15485at 3241.429 kb on + strand, within IAI46_15485at 3241.429 kb on + strand, within IAI46_15485at 3241.430 kb on - strand, within IAI46_15485at 3241.430 kb on - strand, within IAI46_15485at 3241.430 kb on - strand, within IAI46_15485

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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3,239,372 - IAI46_15475 0.24 -0.3
3,239,374 + IAI46_15475 0.24 -0.1
3,239,417 + IAI46_15475 0.31 -0.7
3,239,585 + IAI46_15475 0.59 -0.7
3,239,644 + IAI46_15475 0.68 -0.9
3,239,644 + IAI46_15475 0.68 +0.2
3,239,645 - IAI46_15475 0.69 +0.4
3,239,712 - IAI46_15475 0.80 +0.0
3,239,737 + IAI46_15475 0.84 -0.3
3,239,737 + IAI46_15475 0.84 +0.3
3,239,747 + IAI46_15475 0.85 +1.1
3,239,748 - IAI46_15475 0.85 +1.1
3,239,859 + -0.5
3,239,859 + +0.1
3,239,860 - -1.8
3,239,860 - +0.8
3,239,860 - -1.4
3,239,860 - -0.7
3,239,860 - +0.2
3,239,984 - -2.6
3,239,988 - -0.6
3,240,137 - -0.8
3,240,259 + -0.2
3,240,259 + -0.2
3,240,344 - IAI46_15480 0.14 +0.5
3,240,665 + IAI46_15480 0.73 +0.2
3,240,665 + IAI46_15480 0.73 -1.2
3,240,666 - IAI46_15480 0.73 -2.7
3,240,666 - IAI46_15480 0.73 -0.5
3,240,737 + IAI46_15480 0.86 -1.7
3,240,803 + +0.6
3,240,804 - +0.7
3,240,887 - -0.0
3,240,914 + -0.5
3,240,914 + -1.0
3,241,186 + IAI46_15485 0.45 +0.0
3,241,187 - IAI46_15485 0.45 -0.9
3,241,375 + IAI46_15485 0.73 +0.6
3,241,376 - IAI46_15485 0.73 +1.6
3,241,429 + IAI46_15485 0.81 +0.6
3,241,429 + IAI46_15485 0.81 +0.4
3,241,429 + IAI46_15485 0.81 +0.4
3,241,430 - IAI46_15485 0.81 +0.8
3,241,430 - IAI46_15485 0.81 -1.1
3,241,430 - IAI46_15485 0.81 +0.1

Or see this region's nucleotide sequence