Strain Fitness in Serratia liquefaciens MT49 around IAI46_14580

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14575 and IAI46_14580 are separated by 417 nucleotidesIAI46_14580 and IAI46_14585 are separated by 188 nucleotides IAI46_14575: IAI46_14575 - glucose-6-phosphate dehydrogenase, at 3,088,887 to 3,090,362 _14575 IAI46_14580: IAI46_14580 - MurR/RpiR family transcriptional regulator, at 3,090,780 to 3,091,652 _14580 IAI46_14585: IAI46_14585 - pyruvate kinase, at 3,091,841 to 3,093,283 _14585 Position (kb) 3090 3091 3092Strain fitness (log2 ratio) -2 -1 0 1at 3090.405 kb on - strandat 3090.503 kb on - strandat 3090.503 kb on - strandat 3090.503 kb on - strandat 3090.503 kb on - strandat 3090.640 kb on - strandat 3090.643 kb on - strandat 3090.691 kb on + strandat 3090.692 kb on - strandat 3090.711 kb on - strandat 3090.712 kb on + strandat 3090.712 kb on + strandat 3090.713 kb on - strandat 3090.755 kb on - strandat 3090.756 kb on + strandat 3090.757 kb on - strandat 3090.777 kb on + strandat 3090.778 kb on - strandat 3090.778 kb on - strandat 3090.778 kb on - strandat 3090.780 kb on - strandat 3090.780 kb on - strandat 3090.785 kb on + strandat 3090.785 kb on + strandat 3091.017 kb on + strand, within IAI46_14580at 3091.017 kb on + strand, within IAI46_14580at 3091.021 kb on + strand, within IAI46_14580at 3091.059 kb on + strand, within IAI46_14580at 3091.060 kb on - strand, within IAI46_14580at 3091.101 kb on - strand, within IAI46_14580at 3091.105 kb on + strand, within IAI46_14580at 3091.106 kb on - strand, within IAI46_14580at 3091.106 kb on - strand, within IAI46_14580at 3091.150 kb on + strand, within IAI46_14580at 3091.254 kb on + strand, within IAI46_14580at 3091.254 kb on + strand, within IAI46_14580at 3091.281 kb on - strand, within IAI46_14580at 3091.312 kb on + strand, within IAI46_14580at 3091.312 kb on + strand, within IAI46_14580at 3091.312 kb on + strand, within IAI46_14580at 3091.313 kb on - strand, within IAI46_14580at 3091.313 kb on - strand, within IAI46_14580at 3091.313 kb on - strand, within IAI46_14580at 3091.322 kb on - strand, within IAI46_14580at 3091.480 kb on - strand, within IAI46_14580at 3091.480 kb on - strand, within IAI46_14580at 3091.481 kb on + strand, within IAI46_14580at 3091.510 kb on + strand, within IAI46_14580at 3091.519 kb on + strand, within IAI46_14580at 3091.541 kb on + strand, within IAI46_14580at 3091.571 kb on + strandat 3091.755 kb on + strandat 3091.835 kb on + strandat 3091.838 kb on + strandat 3091.838 kb on + strandat 3091.838 kb on + strandat 3091.838 kb on + strandat 3091.838 kb on + strandat 3091.839 kb on - strandat 3091.839 kb on - strandat 3091.839 kb on - strandat 3091.839 kb on - strandat 3091.941 kb on + strandat 3092.038 kb on + strand, within IAI46_14585at 3092.038 kb on + strand, within IAI46_14585at 3092.039 kb on - strand, within IAI46_14585at 3092.083 kb on + strand, within IAI46_14585at 3092.083 kb on + strand, within IAI46_14585at 3092.117 kb on - strand, within IAI46_14585at 3092.182 kb on + strand, within IAI46_14585at 3092.182 kb on + strand, within IAI46_14585at 3092.217 kb on + strand, within IAI46_14585at 3092.242 kb on - strand, within IAI46_14585at 3092.456 kb on + strand, within IAI46_14585at 3092.575 kb on - strand, within IAI46_14585

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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3,090,405 - +0.7
3,090,503 - +0.0
3,090,503 - -0.7
3,090,503 - -1.3
3,090,503 - +0.8
3,090,640 - -0.1
3,090,643 - -2.3
3,090,691 + -0.3
3,090,692 - +0.4
3,090,711 - +1.4
3,090,712 + +0.9
3,090,712 + +1.1
3,090,713 - -0.5
3,090,755 - -1.6
3,090,756 + -0.5
3,090,757 - -1.0
3,090,777 + -0.5
3,090,778 - -0.6
3,090,778 - -0.1
3,090,778 - -0.4
3,090,780 - -0.6
3,090,780 - +0.4
3,090,785 + +0.0
3,090,785 + -1.1
3,091,017 + IAI46_14580 0.27 -0.1
3,091,017 + IAI46_14580 0.27 +0.1
3,091,021 + IAI46_14580 0.28 +0.8
3,091,059 + IAI46_14580 0.32 -0.5
3,091,060 - IAI46_14580 0.32 -0.5
3,091,101 - IAI46_14580 0.37 +0.0
3,091,105 + IAI46_14580 0.37 -0.2
3,091,106 - IAI46_14580 0.37 +0.2
3,091,106 - IAI46_14580 0.37 -0.5
3,091,150 + IAI46_14580 0.42 -0.2
3,091,254 + IAI46_14580 0.54 +1.0
3,091,254 + IAI46_14580 0.54 -1.2
3,091,281 - IAI46_14580 0.57 -1.0
3,091,312 + IAI46_14580 0.61 -0.0
3,091,312 + IAI46_14580 0.61 +0.6
3,091,312 + IAI46_14580 0.61 +0.1
3,091,313 - IAI46_14580 0.61 -0.1
3,091,313 - IAI46_14580 0.61 +1.0
3,091,313 - IAI46_14580 0.61 -0.7
3,091,322 - IAI46_14580 0.62 +0.6
3,091,480 - IAI46_14580 0.80 +0.8
3,091,480 - IAI46_14580 0.80 -1.0
3,091,481 + IAI46_14580 0.80 +0.1
3,091,510 + IAI46_14580 0.84 +0.7
3,091,519 + IAI46_14580 0.85 -0.8
3,091,541 + IAI46_14580 0.87 +0.0
3,091,571 + +0.9
3,091,755 + -1.0
3,091,835 + +1.7
3,091,838 + -0.3
3,091,838 + +1.6
3,091,838 + +0.8
3,091,838 + +1.7
3,091,838 + -1.0
3,091,839 - +0.1
3,091,839 - +0.2
3,091,839 - -0.6
3,091,839 - -0.2
3,091,941 + -1.0
3,092,038 + IAI46_14585 0.14 +0.0
3,092,038 + IAI46_14585 0.14 -0.9
3,092,039 - IAI46_14585 0.14 -1.0
3,092,083 + IAI46_14585 0.17 -0.3
3,092,083 + IAI46_14585 0.17 +1.0
3,092,117 - IAI46_14585 0.19 +0.7
3,092,182 + IAI46_14585 0.24 -0.0
3,092,182 + IAI46_14585 0.24 -0.6
3,092,217 + IAI46_14585 0.26 +0.1
3,092,242 - IAI46_14585 0.28 +0.7
3,092,456 + IAI46_14585 0.43 +1.2
3,092,575 - IAI46_14585 0.51 +0.4

Or see this region's nucleotide sequence