Strain Fitness in Serratia liquefaciens MT49 around IAI46_14540

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14535 and IAI46_14540 are separated by 208 nucleotidesIAI46_14540 and IAI46_14545 are separated by 101 nucleotidesIAI46_14545 and IAI46_14550 are separated by 80 nucleotides IAI46_14535: IAI46_14535 - long-chain-fatty-acid--CoA ligase FadD, at 3,081,037 to 3,082,725 _14535 IAI46_14540: IAI46_14540 - Slp family lipoprotein, at 3,082,934 to 3,083,524 _14540 IAI46_14545: IAI46_14545 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 3,083,626 to 3,084,327 _14545 IAI46_14550: IAI46_14550 - ATP-dependent DNA helicase, at 3,084,408 to 3,086,312 _14550 Position (kb) 3082 3083 3084Strain fitness (log2 ratio) -2 -1 0 1 2at 3081.947 kb on + strand, within IAI46_14535at 3082.039 kb on - strand, within IAI46_14535at 3082.089 kb on - strand, within IAI46_14535at 3082.129 kb on - strand, within IAI46_14535at 3082.133 kb on + strand, within IAI46_14535at 3082.134 kb on - strand, within IAI46_14535at 3082.186 kb on + strand, within IAI46_14535at 3082.194 kb on - strand, within IAI46_14535at 3082.217 kb on + strand, within IAI46_14535at 3082.401 kb on + strand, within IAI46_14535at 3082.403 kb on + strand, within IAI46_14535at 3082.442 kb on - strand, within IAI46_14535at 3082.554 kb on + strand, within IAI46_14535at 3082.574 kb on + strandat 3082.619 kb on + strandat 3082.729 kb on - strandat 3082.732 kb on - strandat 3082.753 kb on + strandat 3082.849 kb on + strandat 3082.857 kb on + strandat 3082.876 kb on - strandat 3082.935 kb on + strandat 3082.978 kb on - strandat 3083.015 kb on - strand, within IAI46_14540at 3083.021 kb on - strand, within IAI46_14540at 3083.107 kb on + strand, within IAI46_14540at 3083.119 kb on - strand, within IAI46_14540at 3083.188 kb on + strand, within IAI46_14540at 3083.550 kb on - strandat 3083.617 kb on - strandat 3083.672 kb on + strandat 3084.380 kb on - strandat 3084.380 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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3,081,947 + IAI46_14535 0.54 -1.0
3,082,039 - IAI46_14535 0.59 +0.4
3,082,089 - IAI46_14535 0.62 +0.0
3,082,129 - IAI46_14535 0.65 +0.8
3,082,133 + IAI46_14535 0.65 +0.6
3,082,134 - IAI46_14535 0.65 -0.5
3,082,186 + IAI46_14535 0.68 -0.2
3,082,194 - IAI46_14535 0.69 -0.2
3,082,217 + IAI46_14535 0.70 -0.8
3,082,401 + IAI46_14535 0.81 +1.8
3,082,403 + IAI46_14535 0.81 -0.2
3,082,442 - IAI46_14535 0.83 +0.3
3,082,554 + IAI46_14535 0.90 -0.1
3,082,574 + -0.0
3,082,619 + -2.0
3,082,729 - -1.5
3,082,732 - +0.6
3,082,753 + -2.7
3,082,849 + +1.7
3,082,857 + -1.1
3,082,876 - -0.3
3,082,935 + -0.7
3,082,978 - +0.2
3,083,015 - IAI46_14540 0.14 +0.3
3,083,021 - IAI46_14540 0.15 -0.5
3,083,107 + IAI46_14540 0.29 +0.9
3,083,119 - IAI46_14540 0.31 -1.5
3,083,188 + IAI46_14540 0.43 -0.7
3,083,550 - +0.3
3,083,617 - +0.1
3,083,672 + +0.9
3,084,380 - +0.9
3,084,380 - +0.1

Or see this region's nucleotide sequence