Strain Fitness in Serratia liquefaciens MT49 around IAI46_14160

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14155 and IAI46_14160 are separated by 294 nucleotidesIAI46_14160 and IAI46_14165 are separated by 23 nucleotides IAI46_14155: IAI46_14155 - DeoR/GlpR transcriptional regulator, at 3,002,719 to 3,003,483 _14155 IAI46_14160: IAI46_14160 - glycerol kinase, at 3,003,778 to 3,005,220 _14160 IAI46_14165: IAI46_14165 - ethanolamine utilization protein EutH, at 3,005,244 to 3,006,491 _14165 Position (kb) 3003 3004 3005 3006Strain fitness (log2 ratio) -2 -1 0 1 2at 3002.803 kb on - strand, within IAI46_14155at 3002.985 kb on - strand, within IAI46_14155at 3003.139 kb on - strand, within IAI46_14155at 3003.388 kb on - strand, within IAI46_14155at 3003.497 kb on - strandat 3003.497 kb on - strandat 3003.565 kb on - strandat 3004.045 kb on + strand, within IAI46_14160at 3004.046 kb on - strand, within IAI46_14160at 3004.046 kb on - strand, within IAI46_14160at 3004.046 kb on - strand, within IAI46_14160at 3004.046 kb on - strand, within IAI46_14160at 3004.057 kb on - strand, within IAI46_14160at 3004.157 kb on - strand, within IAI46_14160at 3004.433 kb on - strand, within IAI46_14160at 3004.490 kb on - strand, within IAI46_14160at 3004.490 kb on - strand, within IAI46_14160at 3004.611 kb on - strand, within IAI46_14160at 3004.663 kb on + strand, within IAI46_14160at 3004.664 kb on - strand, within IAI46_14160at 3004.708 kb on + strand, within IAI46_14160at 3004.918 kb on + strand, within IAI46_14160at 3004.988 kb on - strand, within IAI46_14160at 3004.993 kb on - strand, within IAI46_14160at 3005.165 kb on - strandat 3005.187 kb on + strandat 3005.268 kb on - strandat 3005.271 kb on + strandat 3005.272 kb on - strandat 3005.274 kb on - strandat 3005.357 kb on + strandat 3005.397 kb on - strand, within IAI46_14165at 3005.399 kb on + strand, within IAI46_14165at 3005.400 kb on - strand, within IAI46_14165at 3005.424 kb on + strand, within IAI46_14165at 3005.425 kb on - strand, within IAI46_14165at 3005.429 kb on + strand, within IAI46_14165at 3005.432 kb on + strand, within IAI46_14165at 3005.432 kb on + strand, within IAI46_14165at 3005.432 kb on + strand, within IAI46_14165at 3005.432 kb on + strand, within IAI46_14165at 3005.433 kb on - strand, within IAI46_14165at 3005.601 kb on - strand, within IAI46_14165at 3005.656 kb on - strand, within IAI46_14165at 3005.736 kb on - strand, within IAI46_14165at 3005.736 kb on - strand, within IAI46_14165at 3005.739 kb on - strand, within IAI46_14165at 3005.754 kb on - strand, within IAI46_14165at 3005.878 kb on + strand, within IAI46_14165at 3005.915 kb on + strand, within IAI46_14165at 3005.915 kb on + strand, within IAI46_14165at 3005.916 kb on - strand, within IAI46_14165at 3005.979 kb on - strand, within IAI46_14165

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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3,002,803 - IAI46_14155 0.11 -0.6
3,002,985 - IAI46_14155 0.35 -0.1
3,003,139 - IAI46_14155 0.55 -0.2
3,003,388 - IAI46_14155 0.87 -0.2
3,003,497 - -0.1
3,003,497 - +0.8
3,003,565 - +0.7
3,004,045 + IAI46_14160 0.19 +0.3
3,004,046 - IAI46_14160 0.19 +0.2
3,004,046 - IAI46_14160 0.19 -2.0
3,004,046 - IAI46_14160 0.19 +0.0
3,004,046 - IAI46_14160 0.19 +0.6
3,004,057 - IAI46_14160 0.19 -2.0
3,004,157 - IAI46_14160 0.26 +0.5
3,004,433 - IAI46_14160 0.45 -0.4
3,004,490 - IAI46_14160 0.49 +0.9
3,004,490 - IAI46_14160 0.49 +2.0
3,004,611 - IAI46_14160 0.58 +0.3
3,004,663 + IAI46_14160 0.61 -0.4
3,004,664 - IAI46_14160 0.61 +0.4
3,004,708 + IAI46_14160 0.64 -0.3
3,004,918 + IAI46_14160 0.79 +0.3
3,004,988 - IAI46_14160 0.84 -1.7
3,004,993 - IAI46_14160 0.84 +1.3
3,005,165 - -1.3
3,005,187 + +0.4
3,005,268 - -0.2
3,005,271 + -0.3
3,005,272 - +1.5
3,005,274 - +0.7
3,005,357 + +0.0
3,005,397 - IAI46_14165 0.12 -1.8
3,005,399 + IAI46_14165 0.12 -1.7
3,005,400 - IAI46_14165 0.12 -0.1
3,005,424 + IAI46_14165 0.14 +0.1
3,005,425 - IAI46_14165 0.15 +0.2
3,005,429 + IAI46_14165 0.15 -0.5
3,005,432 + IAI46_14165 0.15 +0.1
3,005,432 + IAI46_14165 0.15 -0.7
3,005,432 + IAI46_14165 0.15 -2.0
3,005,432 + IAI46_14165 0.15 -0.5
3,005,433 - IAI46_14165 0.15 +0.1
3,005,601 - IAI46_14165 0.29 -0.3
3,005,656 - IAI46_14165 0.33 +0.5
3,005,736 - IAI46_14165 0.39 -1.4
3,005,736 - IAI46_14165 0.39 -1.5
3,005,739 - IAI46_14165 0.40 +1.3
3,005,754 - IAI46_14165 0.41 +2.3
3,005,878 + IAI46_14165 0.51 +0.7
3,005,915 + IAI46_14165 0.54 -1.3
3,005,915 + IAI46_14165 0.54 -0.4
3,005,916 - IAI46_14165 0.54 -0.3
3,005,979 - IAI46_14165 0.59 -0.2

Or see this region's nucleotide sequence